rssrwn / semla-flowLinks
Efficient 3D molecular generation with flow-matching and Semla
☆34Updated 3 months ago
Alternatives and similar repositories for semla-flow
Users that are interested in semla-flow are comparing it to the libraries listed below
Sorting:
- Mixed continous/categorical flow-matching model for de novo molecule generation.☆111Updated this week
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated 11 months ago
- ☆27Updated last year
- A GFlowNet with a chemical synthesis action space.☆76Updated 5 months ago
- Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation☆49Updated last year
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆85Updated 5 months ago
- Generative modeling of molecular dynamics trajectories☆158Updated 3 months ago
- Source code for Equivariant Flow Matching for Molecular Conformer Generation☆36Updated last month
- MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation☆63Updated 11 months ago
- Pose checks for 3D Structure-based Drug Design methods☆84Updated 8 months ago
- ☆56Updated 7 months ago
- MiDi: Mixed Graph and 3D Denoising Diffusion for Molecule Generation☆103Updated 9 months ago
- Implementation for ICLR2024 Oral paper "Unified Generative Modeling of 3D Molecules with Bayesian Flow Networks"☆54Updated last year
- Implementation of "Denoise Pretraining on Non-equilibrium Molecular Conformations for Accurate and Transferable Neural Potentials" in PyT…☆14Updated last year
- Implementation for NeurIPS 2023 paper "Equivariant Flow Matching with Hybrid Probability Transport for 3D Molecule Generation"☆36Updated last year
- Official implementation of pre-training via denoising for TorchMD-NET☆92Updated 2 years ago
- Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching☆9Updated last month
- [ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen☆51Updated last year
- Flow-matching for coarse graining of miniproteins.☆18Updated 2 years ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆85Updated 3 months ago
- ☆44Updated last year
- Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023☆122Updated last year
- This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…☆62Updated last year
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)☆210Updated last month
- List of Geometric GNNs for 3D atomic systems☆113Updated last year
- [TMLR 2023] Training and simulating MD with ML force fields☆111Updated 8 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆61Updated 10 months ago
- Code for “FlowMM Generating Materials with Riemannian Flow Matching” and "FlowLLM: Flow Matching for Material Generation with Large Langu…☆147Updated 8 months ago
- The official codebase of the paper "Chemical language modeling with structured state space sequence models"☆79Updated 11 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆75Updated last year