Alternatives and similar repositories for datasets

Users that are interested in datasets are comparing it to the libraries listed below

• HDRUK / oss
  HDR UK OSS Contributions
  ☆25Updated 10 months ago
• spiros / hdr-caliber-phenotype-library
  HDR UK National Phenotype Library
  ☆23Updated 2 years ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆111Updated 2 years ago
• BHFDSC / Linked-EHR-England-2021
  Publication: Linked electronic health records for research on a nationwide cohort including over 54 million people in England
  ☆19Updated 2 years ago
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 5 years ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆67Updated 2 years ago
• turing-roche / turing-roche-documentation
  ☆29Updated 10 months ago
• alistairewj / mimic-iv-aline-study
  Replication of the arterial line study in MIMIC-IV
  ☆75Updated 4 years ago
• AIM-Harvard / SDoH
  Large Language Models to Identify Social Determinants of Health in Electronic Health Records | Paper: https://www.nature.com/articles/s41…
  ☆49Updated 2 years ago
• VectorInstitute / cyclops
  A toolkit for evaluating and monitoring AI models in clinical settings
  ☆87Updated last week
• CogStack / Foresight
  Deep Generative Modelling of Patient Timelines using Electronic Health Records
  ☆70Updated 7 months ago
• beaunorgeot / MI-CLAIM
  A community repository for MI_CLAIM (Minimum Information for CLinical AI Modeling) reporting standards
  ☆23Updated 5 years ago
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆51Updated last year
• spiros / phemap
  Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
  ☆38Updated 3 years ago
• tomolopolis / SNOMED-CT_Analysis
  Notebooks etc. Analysis of SNOMED-CT for the Clinical Coding Pilot and related work
  ☆14Updated 5 years ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆48Updated 4 months ago
• MIT-LCP / physionet-build
  The new PhysioNet platform.
  ☆74Updated this week
• yikuan8 / MIMIC-IV-Postgres
  Installing MIMIC-IV in a local Postgres database
  ☆44Updated 4 years ago
• rjake / ICD10-hierarchy
  ☆16Updated 3 weeks ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆71Updated last month
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 8 years ago
• dsi-icl / biobank-read
  Python for UK Biobank data analysis
  ☆10Updated last year
• nhsx / skunkworks-long-stayer-risk-stratification-baseline
  Baseline models for predicting Length of Stay
  ☆10Updated 2 years ago
• philipdarke / ukbb-ehr-data
  Prepare UK Biobank Electronic Health Record data for research
  ☆30Updated 3 years ago
• AtlasCUMC / ICD10-ICD9-codes-conversion
  ☆41Updated last year
• OHDSI / PhenotypeLibrary
  A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…
  ☆50Updated 3 months ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆89Updated 2 months ago
• nliulab / AutoScore
  AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator
  ☆35Updated last month
• OHDSI / Tutorial-CDM
  Training materials for Vocabulary & CDM Tutorial.
  ☆22Updated 6 years ago