A package, and script, to perform imaging transcriptomics on a neuroimaging scan.
☆29Apr 5, 2026Updated 6 months ago
Alternatives and similar repositories for Imaging-transcriptomics
Users that are interested in Imaging-transcriptomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data. DEPRICATED! Succeeded by "NiSpace"☆20May 30, 2025Updated last year
- A package, and script, to perform imaging transcriptomics on a neuroimaging scan.☆16Jul 1, 2024Updated 2 years ago
- ☆52Nov 23, 2021Updated 4 years ago
- Toolbox for performing gene set enrichment analysis in Matlab (including ensemble enrichment)☆18Nov 5, 2023Updated 2 years ago
- Code and documentation supporting Markello et al, 2021, "Standardizing workflows in imaging transcriptomics with the abagen toolbox" (Bi…☆10Jan 12, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆33Sep 7, 2018Updated 8 years ago
- Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.☆53Jun 29, 2023Updated 3 years ago
- Neuroimaging Spatial Colocalization Environment (under development).☆20Updated this week
- A toolbox for custom data visualization in the subcortex and cerebellum☆70Oct 24, 2026Updated last week
- https://doi.org/10.1101/2021.02.22.432228☆11Nov 24, 2021Updated 4 years ago
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆115Sep 3, 2024Updated 2 years ago
- Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)☆25Apr 25, 2021Updated 5 years ago
- This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…☆81Jun 8, 2026Updated 4 months ago
- ☆10Sep 26, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Plot the boundaries of ROIs on a surface☆74Updated this week
- Brain Cell Type Specific Gene Expression Analysis☆19Dec 27, 2023Updated 2 years ago
- BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics data…☆254Oct 22, 2026Updated last week
- Morphometric similarity in psychosis- data and code☆59May 8, 2019Updated 7 years ago
- ☆13Apr 11, 2023Updated 3 years ago
- Segmentation tool for the delineation and volumetric quantification of the choroid plexus☆26Jun 2, 2025Updated last year
- Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…☆23Oct 28, 2025Updated last year
- A toolbox for comparing brain maps☆352Oct 22, 2026Updated last week
- Code supporting Hansen et al., 2021, Nature Human Behaviour "Mapping gene transcription and neurocognition across human neocortex".☆25Sep 22, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Coordinate- and image-based meta-analysis in Python☆215Oct 11, 2026Updated 2 weeks ago
- This repository contains all code for the BLMM toolbox.☆22Jan 31, 2024Updated 2 years ago
- agent-based S-I-R model for neurodegeneration☆24Mar 1, 2022Updated 4 years ago
- micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read…☆121Oct 23, 2026Updated last week
- R package to implement longitudinal ComBat: A method for harmonizing multi-batch longitudinal data☆44Sep 10, 2025Updated last year
- PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…☆34Updated this week
- Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity☆58Jun 17, 2024Updated 2 years ago
- ☆226Jun 23, 2023Updated 3 years ago
- perivascular space segmentation☆17Sep 2, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python interface for generating coordinate tables and region labels from statistical MRI images☆127Oct 19, 2026Updated last week
- Surface to Tractography time-Resolved EEG Activation Mapping in 4 Dimensions☆31Sep 30, 2026Updated last month
- A Python implementation of Partial Least Squares (PLS) decomposition☆85Sep 18, 2025Updated last year
- A prediction-based extension of network-based statistics.☆40May 26, 2026Updated 5 months ago
- ggseg3d R package for visualising brain atlases through plotly☆46Oct 21, 2026Updated last week
- Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet☆42Oct 7, 2026Updated 3 weeks ago
- Plotting tool for brain atlases, in ggplot☆275Updated this week