looooongChen / instSegLinks
Instance segmtnation via pixel embedding learning
☆14Updated 2 years ago
Alternatives and similar repositories for instSeg
Users that are interested in instSeg are comparing it to the libraries listed below
Sorting:
- This project is done in collaboration with Rhode Island Hospital, Department of Diagnostic Imaging.☆24Updated 5 years ago
- sagieppel / Classification-of-object-in-a-specific-image-region-using-a-convolutional-neural-net-with-ROI-mask-aClassification of object in a specific image region using a convolutional neural net with ROI mask as input☆26Updated 2 years ago
- Dataset: landmarks for registration of histology images☆32Updated 4 years ago
- Temporarily removed for anonymization☆20Updated 3 years ago
- This code was submitted to Cell Tracking Challenge, ISBI 2020.☆14Updated 4 years ago
- 3D volume data augmentation package inspired by albumentations☆79Updated 5 years ago
- official implementation of the PatchPerPix instance segmentation method☆33Updated last year
- Weakly Supervised Cell Instance Segmentation by Propagating from Detection Response, in MICCAI2019.☆43Updated 4 years ago
- [Medical Image Analysis 2019] Attentive Neural Cell Instance Segmentation☆47Updated 3 years ago
- Python implementation of discrete skeleton evolution☆18Updated last year
- Build U-Nets for segmentation from pre-trained TorchVision models.☆90Updated 5 years ago
- A 3D level set method, based on a paper for X-Ray CT segmentation of root systems in WACV 2018.☆25Updated 5 years ago
- Endoscopy Compter Vision Challenges (EAD2020, EDD2020)☆12Updated 5 years ago
- Instance segmentation via deep pixel embedding☆23Updated 4 years ago
- Implementation of Hausdorff loss function for DNN learning in segmentation tasks.☆66Updated 11 months ago
- ☆20Updated 4 years ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆84Updated 5 years ago
- [MICCAI2019 & TMI2020] Overfitting under Class Imbalance: Anaylsis and Improvements for Medical Image Segmentation.☆22Updated last year
- An unsupervised (or self-supervised) loss function for binary image segmentation (TensorFlow)☆69Updated 3 years ago
- Implementation of various label fusion approaches for medical imaging.☆14Updated last week
- Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" …☆101Updated 3 years ago
- PyTorch implementation of SPOCO☆32Updated 10 months ago
- Cross-view transformers for multi-view analysis of unregistered medical images.☆25Updated 3 years ago
- An unofficial pytorch implementation for "Learning Active Contour Models for Medical Image Segmentation" by Chen, Xu, et al.☆75Updated 5 months ago
- pyTorch implementation of clDice☆29Updated 5 years ago
- SA-Diagnet: Self-attention-based network for diagnosing histopathological images☆29Updated 4 years ago
- WSICS☆30Updated 6 years ago
- Loss functions for Image Segmentation☆12Updated 5 years ago
- My implementation for the MRNet competition hosted by the Stanford ML group☆38Updated 5 years ago
- Tutorial about combining PyTorch and NiftyNet for deep learning and medical image computing☆14Updated 5 years ago