looooongChen / instSeg
Instance segmtnation via pixel embedding learning
☆14Updated 2 years ago
Alternatives and similar repositories for instSeg:
Users that are interested in instSeg are comparing it to the libraries listed below
- official implementation of the PatchPerPix instance segmentation method☆33Updated last year
- This project is done in collaboration with Rhode Island Hospital, Department of Diagnostic Imaging.☆24Updated 5 years ago
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Updated 4 years ago
- An unsupervised (or self-supervised) loss function for binary image segmentation (TensorFlow)☆69Updated 3 years ago
- This code was submitted to Cell Tracking Challenge, ISBI 2020.☆14Updated 3 years ago
- ☆20Updated 4 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- PyTorch implementation of SPOCO☆32Updated 9 months ago
- [Medical Image Analysis 2019] Attentive Neural Cell Instance Segmentation☆47Updated 3 years ago
- Dataset: landmarks for registration of histology images☆32Updated 4 years ago
- Instance segmentation via deep pixel embedding☆23Updated 4 years ago
- 3D volume data augmentation package inspired by albumentations☆79Updated 5 years ago
- For cell segmentation and tracking.☆36Updated 5 years ago
- Weakly Supervised Cell Instance Segmentation by Propagating from Detection Response, in MICCAI2019.☆43Updated 4 years ago
- MPM: Joint Representation of Motion and Position Map for Cell Tracking☆40Updated 3 years ago
- Endoscopy Compter Vision Challenges (EAD2020, EDD2020)☆12Updated 5 years ago
- A lightweight and multiscale network for biomedical image segmentation☆10Updated 4 years ago
- Official PyTorch implementation of "Unsupervised Microvascular Image Segmentation Using an Active Contours Mimicking Neural Network"☆73Updated 4 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- ☆18Updated last year
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆84Updated 5 years ago
- A 3D level set method, based on a paper for X-Ray CT segmentation of root systems in WACV 2018.☆25Updated 5 years ago
- Official implementation of the Generalized Wasserstein Dice Loss in PyTorch☆80Updated 2 years ago
- ☆231Updated last year
- sagieppel / Classification-of-object-in-a-specific-image-region-using-a-convolutional-neural-net-with-ROI-mask-aClassification of object in a specific image region using a convolutional neural net with ROI mask as input☆26Updated 2 years ago
- pytorch implementation of paper https://www.frontiersin.org/articles/10.3389/fcomp.2020.00035/full☆63Updated 2 years ago
- A Python package for geometric transformations of images for data augmentation in deep learning☆66Updated 5 years ago
- PyTorch implementation of HighRes3DNet☆51Updated last year
- Fill holes in binary 2D & 3D images fast.☆21Updated 2 months ago
- WSICS☆30Updated 6 years ago