lanl / pyDNMFkLinks
Python Distributed Non Negative Matrix Factorization with custom clustering
☆24Updated 2 years ago
Alternatives and similar repositories for pyDNMFk
Users that are interested in pyDNMFk are comparing it to the libraries listed below
Sorting:
- ☆11Updated 8 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆61Updated 5 years ago
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- Analysis of data produced by cvapipe for the variance paper☆24Updated last year
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆24Updated 3 months ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆43Updated 3 years ago
- Python implementation of the ElPiGraph algorithm with cpu and gpu support☆19Updated last year
- A spectral method for assessing and combining multiple data visualizations☆50Updated 2 years ago
- Initialization is critical for preserving global data structure in both t-SNE and UMAP☆24Updated 5 years ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Invariant Representation learning☆18Updated last year
- Scalable framework for comparing metric measure spaces with up to 1M points.☆15Updated 4 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 7 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Updated 3 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Updated 8 months ago
- Attraction-Repulsion Spectrum in Neighbor Embeddings☆31Updated 3 years ago
- Python implementations for Sparse CCA☆19Updated 2 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆26Updated 10 months ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆72Updated 4 months ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- Probabilistic contrastive principal component analysis (PCPCA)☆24Updated 4 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆17Updated last year
- ☆11Updated 6 years ago
- Systematically learn and evaluate manifolds from high-dimensional data☆104Updated 3 months ago
- Python code for genetic marker selection using linear programming☆42Updated last year
- ☆66Updated 2 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Updated 4 years ago