kasravnd / SuffixTreeLinks
Optimized implementation of suffix tree in python using Ukkonen's algorithm.
☆53Updated last month
Alternatives and similar repositories for SuffixTree
Users that are interested in SuffixTree are comparing it to the libraries listed below
Sorting:
- Suffix tree for string searching☆165Updated 3 years ago
- Python implementation of Suffix Trees and Generalized Suffix Trees.☆127Updated 5 years ago
- markov clustering in python☆175Updated 3 years ago
- Python utilities for Cytoscape and Cytoscape.js☆176Updated 3 years ago
- markov cluster algorithm - python☆82Updated 8 years ago
- graph-tool - Efficient network analysis☆109Updated 2 years ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆224Updated 5 months ago
- visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells☆78Updated 2 years ago
- Fast hierarchical clustering routines for R and Python.☆154Updated last week
- cython wrapper for khash☆29Updated last year
- A small project template that shows how to wrap C code into python using cython, along with other packaging concepts☆136Updated 6 months ago
- A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.☆54Updated 2 years ago
- Time everything in IPython☆126Updated 2 years ago
- Automatically exported from code.google.com/p/python-graph☆162Updated 5 months ago
- Hive Plots in using Python & matplotlib!☆71Updated 7 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 7 years ago
- Bioinformatics in Python☆58Updated last year
- A collection of Python scripts that implement various graph clustering algorithms, specifically for identifying protein complexes from pr…☆94Updated 7 years ago
- Fisher exact test for mxn contingency table in python☆38Updated last year
- SNAP Python code, SWIG related files☆306Updated 3 years ago
- ☆73Updated last week
- Sequence learning toolkit for Python☆701Updated 2 years ago
- A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.☆676Updated 8 months ago
- A Pythonic indexed priority queue☆90Updated this week
- The Levenshtein Python C extension module contains functions for fast computation of Levenshtein distance and string similarity