kasravnd / SuffixTreeLinks
Optimized implementation of suffix tree in python using Ukkonen's algorithm.
☆53Updated 2 years ago
Alternatives and similar repositories for SuffixTree
Users that are interested in SuffixTree are comparing it to the libraries listed below
Sorting:
- Suffix tree for string searching☆165Updated 3 years ago
- Python implementation of Suffix Trees and Generalized Suffix Trees.☆127Updated 5 years ago
- Ukkonen's suffix tree algorithm, a complete version implemented in Python☆26Updated 2 years ago
- SNAP Python code, SWIG related files☆307Updated 3 years ago
- visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells☆78Updated 2 years ago
- Python utilities for Cytoscape and Cytoscape.js☆176Updated 3 years ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Updated 3 months ago
- graph-tool - Efficient network analysis☆104Updated 2 years ago
- The Levenshtein Python C extension module contains functions for fast computation of Levenshtein distance and string similarity☆389Updated 3 years ago
- A graph manipulation library in pure Python☆74Updated last year
- Time everything in IPython☆125Updated last year
- Pandas Msgpack☆24Updated 3 years ago
- Pilot to work with dynamic visualization by using python☆60Updated 5 years ago
- markov cluster algorithm - python☆82Updated 8 years ago
- A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.☆53Updated last year
- C++ Ternary Search Tree implementation with Python bindings☆43Updated 7 years ago
- fast, pure-python interval overlap testing☆52Updated 5 years ago
- A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.☆668Updated 7 months ago
- Example Python code for comparing documents using MinHash☆251Updated 6 years ago
- A collection of Python scripts that implement various graph clustering algorithms, specifically for identifying protein complexes from pr…☆94Updated 6 years ago
- markov clustering in python☆175Updated 3 years ago
- Explicit Decomposition with Neighborhoods python version☆44Updated last year
- A Pythonic indexed priority queue☆90Updated last month
- Probabilistic data structures in python http://pyprobables.readthedocs.io/en/latest/index.html☆122Updated last month
- pyxDamerauLevenshtein implements the Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance.☆249Updated 2 weeks ago
- Bloom filter for Python☆86Updated 4 years ago
- cython wrapper for khash☆29Updated last year
- D3 JavaScript networkx Graphs in Python☆50Updated 8 years ago
- DAFSA-based dictionary-like read-only objects for Python. Based on `dawgdic` C++ library.☆303Updated last year
- Ordered subsets over a finite domain☆26Updated this week