Alternatives and similar repositories for SuffixTree

Users that are interested in SuffixTree are comparing it to the libraries listed below

• kvh / Python-Suffix-Tree
  Suffix tree for string searching
  ☆165Updated 4 years ago
• ptrus / suffix-trees
  Python implementation of Suffix Trees and Generalized Suffix Trees.
  ☆127Updated 5 years ago
• mutux / Ukkonen-s-Suffix-Tree-Algorithm
  Ukkonen's suffix tree algorithm, a complete version implemented in Python
  ☆26Updated 2 years ago
• trueprice / python-graph-clustering
  A collection of Python scripts that implement various graph clustering algorithms, specifically for identifying protein complexes from pr…
  ☆94Updated 7 years ago
• ucsd-ccbb / visJS2jupyter
  visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells
  ☆78Updated 2 years ago
• cytoscape / py2cytoscape
  Python utilities for Cytoscape and Cytoscape.js
  ☆176Updated 3 years ago
• koteth / python_mcl
  markov cluster algorithm - python
  ☆82Updated 8 years ago
• cceh / suffix-tree
  A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.
  ☆54Updated 2 years ago
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆224Updated 5 months ago
• lanl / pyxDamerauLevenshtein
  pyxDamerauLevenshtein implements the Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance.
  ☆250Updated 2 months ago
• brentp / interlap
  fast, pure-python interval overlap testing
  ☆52Updated 5 years ago
• cpcloud / ipython-autotime
  Time everything in IPython
  ☆126Updated 2 years ago
• snap-stanford / snap-python
  SNAP Python code, SWIG related files
  ☆306Updated 3 years ago
• antmd / graph-tool
  graph-tool - Efficient network analysis
  ☆109Updated 2 years ago
• jciskey / pygraph
  A graph manipulation library in pure Python
  ☆74Updated last year
• vtraag / louvain-igraph
  Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.
  ☆254Updated last year
• benhoyt / pybktree
  Python BK-tree data structure to allow fast querying of "close" matches
  ☆186Updated 4 years ago
• uqfoundation / klepto
  persistent caching to memory, disk, or database
  ☆278Updated 3 weeks ago
• borzunov / cpmoptimize
  🚀 🐍 Optimizes Python bytecode calculating linear recurrences, reducing the time complexity from O(n) to O(log n)
  ☆183Updated 3 years ago
• Shoobx / python-graph
  Automatically exported from code.google.com/p/python-graph
  ☆162Updated 6 months ago
• chrisjmccormick / MinHash
  Example Python code for comparing documents using MinHash
  ☆252Updated 6 years ago
• claesenm / resvm
  Robust Ensemble of SVMs
  ☆21Updated 11 years ago
• rudi-cilibrasi / libcomplearn
  C language complearn library
  ☆45Updated 10 years ago
• maclandrol / FisherExact
  Fisher exact test for mxn contingency table in python
  ☆38Updated last year
• xgfs / node2vec-c
  node2vec implementation in C++
  ☆53Updated 5 years ago
• piskvorky / sparsesvd
  Python wrapper around SVDLIBC, a fast library for sparse Singular Value Decomposition
  ☆55Updated 12 years ago
• ahupp / bktree
  Implementation of Burkhard-Keller trees in various languages
  ☆52Updated 15 years ago
• carlos-jenkins / pydotplus
  PyDotPlus is an improved version of the old pydot project that provides a Python Interface to Graphviz's Dot language.
  ☆78Updated 7 years ago
• hiway / python-bloom-filter
  Bloom filter for Python
  ☆86Updated 4 years ago
• flier / pyfasthash
  Python Non-cryptographic Hash Library
  ☆288Updated 2 years ago