kvh / Python-Suffix-Tree
Suffix tree for string searching
☆161Updated 3 years ago
Alternatives and similar repositories for Python-Suffix-Tree
Users that are interested in Python-Suffix-Tree are comparing it to the libraries listed below
Sorting:
- Python implementation of Suffix Trees and Generalized Suffix Trees.☆127Updated 4 years ago
- Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)☆12Updated 7 years ago
- fast, pure-python interval overlap testing☆52Updated 4 years ago
- Python collections supporting parallel map/reduce style methods☆40Updated last year
- Vector space representation of genetic data☆36Updated 8 years ago
- Native Python library for generic sequence alignment☆55Updated 5 years ago
- Quick solution to Kaggle's "What's Cooking" competition.☆26Updated 9 years ago
- HAT-Trie for Python☆86Updated 9 years ago
- Optimized implementation of suffix tree in python using Ukkonen's algorithm.☆52Updated 2 years ago
- Python bindings to Succinct Data Structure Library 2.0☆31Updated 5 years ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆174Updated 3 years ago
- High-performance Non-negative Matrix Factorizations (NMF) - Python/C++☆49Updated 7 years ago
- Python Set subclass that supports searching by ngram similarity☆119Updated 3 years ago
- convert a lot of zeros and ones to fewer real numbers☆23Updated 10 years ago
- A tool for generating heatmaps from hierarchically clustered data.☆40Updated 6 years ago
- Memory-efficient Count-Min Sketch Counter (based on Madoka C++ library)☆26Updated 6 years ago
- D3 JavaScript networkx Graphs in Python☆51Updated 7 years ago
- Roaring Bitmap in Cython☆81Updated last year
- Python utilities for Cytoscape and Cytoscape.js☆175Updated 3 years ago
- Generation of CWL programmatically. Available types: CommandLineTool and DockerRequirement☆29Updated 4 years ago
- Rectified Factor Networks☆38Updated 5 years ago
- A python/c++ implementation of an approximate nearest neighbor search for sparse data structures based on the idea of local sensitiv hash…☆10Updated 2 years ago
- 🚀 🐍 Optimizes Python bytecode calculating linear recurrences, reducing the time complexity from O(n) to O(log n)☆180Updated 3 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- Predicting closed questions on Stack Overflow☆44Updated 7 years ago
- embedded graph datastore☆184Updated 6 years ago
- word vector library☆34Updated 5 years ago
- Glove applied to Pubmed Central BioC Corpus☆9Updated 10 years ago
- Run Nx2 Cross Validation for multiple binary classifiers in parallel with optional downsampling☆13Updated 10 years ago
- ☆34Updated 7 years ago