ptrus / suffix-treesLinks
Python implementation of Suffix Trees and Generalized Suffix Trees.
☆127Updated 5 years ago
Alternatives and similar repositories for suffix-trees
Users that are interested in suffix-trees are comparing it to the libraries listed below
Sorting:
- Suffix tree for string searching☆165Updated 3 years ago
- NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.☆223Updated 4 months ago
- A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.☆53Updated 2 years ago
- pyxDamerauLevenshtein implements the Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance.☆250Updated last month
- A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.☆672Updated 7 months ago
- Python package for string algorithms ➰☆49Updated 10 months ago
- Optimized implementation of suffix tree in python using Ukkonen's algorithm.☆53Updated last week
- Fast implementation of the edit distance(Levenshtein distance)☆690Updated last year
- fast, pure-python interval overlap testing☆52Updated 5 years ago
- Find parts of long text or data, allowing for some changes/typos.☆332Updated 5 months ago
- Roaring Bitmap in Cython☆81Updated last year
- A Fast Levenshtein Distance Library for Python☆85Updated 8 months ago
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆318Updated 7 years ago
- DAFSA-based dictionary-like read-only objects for Python. Based on `dawgdic` C++ library.☆303Updated last year
- A simple proof of concept levenshtein automaton in Python☆108Updated 10 years ago
- 💥 Cython hash tables that assume keys are pre-hashed☆86Updated 5 months ago
- CGAT-ruffus is a lightweight python module for running computational pipelines☆175Updated 4 years ago
- Time everything in IPython☆125Updated 2 years ago
- Open compressed files in Python☆79Updated 3 weeks ago
- Probabilistic data structures in python http://pyprobables.readthedocs.io/en/latest/index.html☆122Updated last month
- Fast hierarchical clustering routines for R and Python.☆153Updated last week
- Python bindings to Succinct Data Structure Library 2.0☆33Updated 6 years ago
- Levenshtein and Hamming distance computation☆116Updated 6 years ago
- Example Python code for comparing documents using MinHash☆251Updated 6 years ago
- Python Set subclass that supports searching by ngram similarity☆119Updated 4 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- Locality-sensitive hashing algorithm for text similarity comparisons☆58Updated 7 months ago
- The Levenshtein Python C extension module contains functions for fast computation of Levenshtein distance and string similarity☆388Updated 3 years ago
- Weighted Levenshtein library☆113Updated 2 years ago
- A comprehensive and scalable set of string tokenizers and similarity measures in Python☆141Updated last year