Python implementation of Suffix Trees and Generalized Suffix Trees.
☆127Aug 5, 2020Updated 5 years ago
Alternatives and similar repositories for suffix-trees
Users that are interested in suffix-trees are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.☆57Nov 5, 2023Updated 2 years ago
- Module to determine where repeats are and make soft-masks of said☆10Mar 14, 2024Updated 2 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆111Jan 22, 2015Updated 11 years ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Bax File Decoder and Data Compressor☆34Jan 3, 2024Updated 2 years ago
- LITS: An Optimized Learned Index for Strings☆13Jun 18, 2025Updated 11 months ago
- Postgis reader for GraphHopper☆18Dec 17, 2020Updated 5 years ago
- C++ implementation of FM Index data structure wrapped in Python☆14Mar 13, 2023Updated 3 years ago
- Evaluate language models using multiple choice items☆13Mar 6, 2026Updated 2 months ago
- Parallel Suffix Array, LCP Array, and Suffix Tree Construction☆51Aug 12, 2019Updated 6 years ago
- Ask people anonymous questions on Slack.☆10Jun 23, 2015Updated 10 years ago
- A toolchain for bringing web2 to web3☆13Nov 11, 2019Updated 6 years ago
- C++ Library implementing Compressed String Dictionaries☆47Apr 25, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A React Table for YouTube Videos☆12Apr 8, 2015Updated 11 years ago
- QuickCached is a memcached server implementation in Java based on QuickServer☆13Jan 16, 2020Updated 6 years ago
- Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,☆12Oct 26, 2019Updated 6 years ago
- OpenCompany Storage Service - store user generated content☆15Aug 26, 2022Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 3 weeks ago
- Parallel approach on distance based outlier detection on streaming data☆10Jan 12, 2020Updated 6 years ago
- Run shell commands in a scientifically reproducible and robust way☆24Apr 23, 2026Updated last month
- ☆11Feb 21, 2023Updated 3 years ago
- Flink dynamic CEP demo☆20Mar 22, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- The ScaleOut Time Windowing Library for Java provides a set of windowing functions for time-ordered lists of events.☆21May 11, 2018Updated 8 years ago
- An approach to apply concept drifts and ADWIN on the streams event time to reason about the progress of watermarks☆12Nov 16, 2018Updated 7 years ago
- Compute the most likely permutation of a lattice given an LM☆10Jan 3, 2013Updated 13 years ago
- Rust wrapper of the BWA C API☆19May 23, 2025Updated last year
- Persistent Bloom Filter☆12Jul 21, 2018Updated 7 years ago
- A fast, compact trigram library for Icelandic.☆12Dec 12, 2025Updated 5 months ago
- Data Processing Kitchen Sink for proteomics data☆13Updated this week
- My research work on developing scalable techniques for trajectory outlier detection☆15Nov 19, 2020Updated 5 years ago
- Modular job submitter for arbitrary pipelines or commands.☆26Apr 11, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Memtier benchmark front-end☆10May 9, 2023Updated 3 years ago
- An optionally fixed-size ordered set of complex terms.☆17Dec 28, 2016Updated 9 years ago
- C++ lossless and lossy mass spectrometry compression☆15Sep 16, 2021Updated 4 years ago
- A simple python library to assist in working with cpes☆19Jan 30, 2024Updated 2 years ago
- Trajectory Inference☆15Sep 2, 2019Updated 6 years ago
- Tree-automata-based run-time type constraints for miniKanren☆14Aug 3, 2023Updated 2 years ago
- 基于计算机视觉的射手姿态分析系统,通过YOLO模型实时检测和分析射手的关键姿态点,帮助进行技术动作分析和改进。☆24Jun 19, 2025Updated 11 months ago