ptrus / suffix-trees
Python implementation of Suffix Trees and Generalized Suffix Trees.
☆127Updated 4 years ago
Alternatives and similar repositories for suffix-trees
Users that are interested in suffix-trees are comparing it to the libraries listed below
Sorting:
- Suffix tree for string searching☆161Updated 3 years ago
- A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.☆51Updated last year
- The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.☆221Updated 8 months ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆107Updated 10 years ago
- Roaring Bitmap in Cython☆81Updated last year
- Fast hierarchical clustering routines for R and Python.☆144Updated this week
- fast, pure-python interval overlap testing☆52Updated 4 years ago
- Ukkonen's suffix tree algorithm, a complete version implemented in Python☆26Updated last year
- Python bindings to Succinct Data Structure Library 2.0☆31Updated 5 years ago
- Optimized implementation of suffix tree in python using Ukkonen's algorithm.☆52Updated 2 years ago
- pyxDamerauLevenshtein implements the Damerau-Levenshtein (DL) edit distance algorithm for Python in Cython for high performance.☆247Updated last year
- Probabilistic data structures in python http://pyprobables.readthedocs.io/en/latest/index.html☆117Updated last week
- A Fast Levenshtein Distance Library for Python☆83Updated 2 months ago
- Levenshtein and Hamming distance computation☆116Updated 5 years ago
- Python Set subclass that supports searching by ngram similarity☆119Updated 3 years ago
- Venn diagrams with word clouds☆50Updated last year
- Fast implementation of the edit distance(Levenshtein distance)☆685Updated last year
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago
- 💥 Cython hash tables that assume keys are pre-hashed☆87Updated 4 months ago
- Draw NetworkX graphs using pydot/graphviz, with support for IPython notebooks.☆118Updated 5 years ago
- Find parts of long text or data, allowing for some changes/typos.☆318Updated 9 months ago
- graph-tool - Efficient network analysis☆101Updated last year
- Wiki form of BLAST documentation from NCBI☆16Updated 8 years ago
- BEETL☆97Updated 2 years ago
- LSH based high dimensional clustering for sets and points☆79Updated 10 years ago
- HAT-Trie for Python☆86Updated 9 years ago
- Fast Python Bloom Filter using Mmap☆127Updated 11 months ago
- persistent caching to memory, disk, or database☆268Updated 2 weeks ago
- Fast, efficiently stored Trie for Python. Uses libdatrie.☆535Updated last year
- Topic modelling software using non-parametric methods☆70Updated 8 years ago