Python implementation of Suffix Trees and Generalized Suffix Trees.
☆126Aug 31, 2026Updated 3 weeks ago
Alternatives and similar repositories for suffix-trees
Users that are interested in suffix-trees are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Suffix tree for string searching☆164Dec 24, 2021Updated 4 years ago
- A Generalized Suffix Tree for any Python iterable using Ukkonen's algorithm, with Lowest Common Ancestor retrieval.☆57Nov 5, 2023Updated 2 years ago
- Module to determine where repeats are and make soft-masks of said☆10Mar 14, 2024Updated 2 years ago
- Educational implementation of BWT and FM-index☆57Sep 28, 2018Updated 7 years ago
- A generalized Karkkainen-Sanders implementation in Python for building suffix arrays and trees for many strings in O(n)☆17Aug 8, 2011Updated 15 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GraphOfDocs: Representing multiple documents as a single graph☆21Jun 22, 2022Updated 4 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- Keyphrase Extraction Review☆14Dec 17, 2025Updated 9 months ago
- Functions for creating and analyzing word co-occurrence networks in Python and R☆12May 18, 2020Updated 6 years ago
- A balanced unbounded interval-tree in Rust with associated values in the nodes☆12Nov 22, 2022Updated 3 years ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated 2 years ago
- FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental r…☆113Jan 22, 2015Updated 11 years ago
- Bax File Decoder and Data Compressor☆33Jan 3, 2024Updated 2 years ago
- 3D household task-based dataset created using customised AI2-THOR.☆14Apr 14, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Postgis reader for GraphHopper☆17Dec 17, 2020Updated 5 years ago
- Tools for Map Matching using Python☆10Nov 16, 2020Updated 5 years ago
- Graph-based Decoding for In Situ Sequencing☆10Jul 2, 2020Updated 6 years ago
- Quick preview of HDF5 files on the command line☆13Oct 5, 2018Updated 7 years ago
- Evaluate language models using multiple choice items☆13Mar 6, 2026Updated 6 months ago
- LITS: An Optimized Learned Index for Strings☆13Sep 15, 2026Updated last week
- The GeoNewsMiner (GNM): An interactive spatial humanities tool to visualize geographical references in historical newspapers☆20Feb 21, 2022Updated 4 years ago
- An open source stream generator which generates reproducible and deterministic out-of-order streams, simulating arbitrary fractions of ou…☆12May 14, 2019Updated 7 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Prediction of glycopeptide fragment mass spectra by deep learning☆12Feb 20, 2024Updated 2 years ago
- A high-throughput data extraction package for LC-MS data.☆10Jun 7, 2023Updated 3 years ago
- Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,☆12Oct 26, 2019Updated 6 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- Simple succinct data structures (in Rust)☆55Sep 14, 2026Updated last week
- ☆11Feb 21, 2023Updated 3 years ago
- A simple mock API server using expressjs that is hosted on firebase.☆10Jun 29, 2022Updated 4 years ago
- [VLDB'22] Cardinality Estimation of Approximate Substring Queries using Deep Learning.☆10Jul 18, 2025Updated last year
- The ScaleOut Time Windowing Library for Java provides a set of windowing functions for time-ordered lists of events.☆22Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- (Defunct + unsupported) Continuation of Danny Yoo's SuffixTree and SubstringDict☆27Oct 31, 2017Updated 8 years ago
- Rust wrapper of the BWA C API☆20May 23, 2025Updated last year
- A fast, compact trigram library for Icelandic.☆12Sep 3, 2026Updated 3 weeks ago
- Persistent Bloom Filter☆12Jul 21, 2018Updated 8 years ago
- A repo to collect issues with calmcode.io☆16Apr 1, 2020Updated 6 years ago
- Modular job submitter for arbitrary pipelines or commands.☆26Aug 7, 2026Updated last month
- Translation of query languages to serialized KoralQuery protocol☆15Updated this week