Alternatives and similar repositories for pharmpy

Users that are interested in pharmpy are comparing it to the libraries listed below

• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated 3 months ago
• OHNLP / awesome-clinical-nlp
  ☆18Updated 5 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• icd-codex / icd-codex
  python library for graphical and continuous representations of ICD9 and ICD10 codes
  ☆41Updated 11 months ago
• Melbourne-BMDS / mimic34md2020_materials
  ☆23Updated 3 years ago
• andrewwlong / odsc_workshop
  Clinical NLP workshop for ODSC
  ☆39Updated 6 years ago
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆39Updated 5 years ago
• obi-ml-public / ehr_deidentification
  Robust de-identification of medical notes using transformer architectures
  ☆56Updated 3 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆32Updated last year
• dhchenx / umls-similarity
  Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
  ☆16Updated 3 years ago
• BD2KOnFHIR / NLP2FHIR
  NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications
  ☆61Updated 3 years ago
• IHTSDO / llm-chain-entity-extraction
  ☆27Updated 6 months ago
• asappresearch / clip
  ☆29Updated 4 years ago
• drivendataorg / snomed-ct-entity-linking-runtime
  Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData
  ☆14Updated last year
• OHNLP / MedXN
  MedXN is a medication normalization system built upon Apache UIMA framework.
  ☆25Updated last year
• ClarityNLP / ClarityNLP
  An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
  ☆108Updated last year
• fhircat / FHIROntopOMOP
  FHIR Ontop OMOP Implementation
  ☆20Updated last year
• CogStack / CogStack-Pipeline
  Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
  ☆47Updated 2 years ago
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 6 months ago
• ebegoli / SynthNotes
  A generator of synthetic psychiatric notes.
  ☆17Updated 5 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆49Updated 3 years ago
• som-shahlab / ehr-rwe
  Weak supervision methods for extracting real world evidence from EHRs
  ☆34Updated 5 years ago
• clinical-ai / omop-etl
  ETL Tool for converting datasets to OMOP CDM
  ☆34Updated 3 years ago
• facebookresearch / Clinical-Trial-Parser
  Library for converting clinical trial eligibility criteria to a machine-readable format.
  ☆176Updated 3 years ago
• clinicalml / HealthKnowledgeGraph
  Health knowledge graph for 157 diseases and 491 symptoms, learned from >270,000 patients' data
  ☆104Updated 5 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• lindvalllab / clinicalXLNet
  Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation
  ☆49Updated 4 years ago
• nedap / deidentify
  A Python library to de-identify medical records with state-of-the-art NLP methods.
  ☆141Updated last month
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆97Updated 5 months ago