yubin-park / pharmpyLinks
pharmpy is an umbrella library for searching the FDA NDC directory, Established Pharmacologic Class (EPC), Anatomical Therapeutic Chemical (ATC) through RxNav, and some other APIs on RxNav.
☆17Updated 5 years ago
Alternatives and similar repositories for pharmpy
Users that are interested in pharmpy are comparing it to the libraries listed below
Sorting:
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 4 months ago
- ☆23Updated 3 years ago
- ☆18Updated 5 years ago
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆41Updated last week
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Updated 2 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆29Updated 8 years ago
- A generator of synthetic psychiatric notes.☆17Updated 5 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- A python package for removing duplicate text in clinical notes or other documents☆39Updated 5 years ago
- Robust de-identification of medical notes using transformer architectures☆57Updated 3 years ago
- ☆221Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- A Python implementation of the tools from H-CUP (Healthcare Cost and Utilization Project)☆66Updated 2 years ago
- Clinical NLP workshop for ODSC☆39Updated 6 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆98Updated 6 months ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆25Updated last year
- A fine-tuned BERT using EHR notes.☆14Updated 6 years ago
- ☆29Updated 4 years ago
- Patient2Vec: A Personalized Interpretable Deep Representation of the Longitudinal Electronic Health Record☆108Updated 7 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆108Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 5 years ago
- NLP system for identifying patient housing status in Veteran Affairs☆12Updated last year
- Automatic classification of medical patient discharge notes into standard disease labels, using deep learning models☆30Updated 6 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Updated 7 years ago
- A Python library to de-identify medical records with state-of-the-art NLP methods.☆142Updated last month
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆84Updated 7 months ago