yubin-park / pharmpy
pharmpy is an umbrella library for searching the FDA NDC directory, Established Pharmacologic Class (EPC), Anatomical Therapeutic Chemical (ATC) through RxNav, and some other APIs on RxNav.
☆16Updated 4 years ago
Alternatives and similar repositories for pharmpy:
Users that are interested in pharmpy are comparing it to the libraries listed below
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- An Interactive Tool for Natural Language Processing on Clinical Text☆22Updated 3 years ago
- Build a medical knowledge graph based on Unified Language Medical System (UMLS)☆19Updated 3 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆28Updated 7 years ago
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆30Updated 8 months ago
- A python package for removing duplicate text in clinical notes or other documents☆36Updated 4 years ago
- ☆14Updated 4 years ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆40Updated 11 months ago
- ☆28Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆79Updated last week
- NLP system for identifying patient housing status in Veteran Affairs☆10Updated last year
- A convolutional neural network model for relation extraction.☆13Updated last year
- A generator of synthetic psychiatric notes.☆16Updated 4 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- UMLS Graph database for semantic queries☆20Updated 2 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.☆15Updated 2 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated 7 months ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 6 years ago
- Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model☆34Updated 7 years ago
- ☆22Updated 2 years ago
- MedXN is a medication normalization system built upon Apache UIMA framework.☆22Updated last year
- Extract annotated misspellings from MIMIC-III.☆12Updated 4 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆23Updated 3 years ago
- Medical Similarity Dataset creation from SNOMED☆27Updated 2 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆76Updated 3 months ago