ih-lab / STORK
☆23Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for STORK
- Scripts for data processing☆41Updated 5 months ago
- deep learning pipeline repository for the paper "Geospatial immune variability illuminates differential evolution of lung adenocarcinoma…☆49Updated 4 years ago
- Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer☆18Updated 4 years ago
- ☆25Updated last year
- A pipeline to segment tissue from the background in histological images☆65Updated last year
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆74Updated 3 years ago
- QuPath extension to run StarDist nucleus detection☆35Updated 2 months ago
- ☆13Updated last year
- Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometria…☆35Updated 9 months ago
- HCC_Deep_learning☆18Updated 4 years ago
- A Python library for deep learning on whole-slide images☆50Updated 3 years ago
- Scripts for https://www.nature.com/articles/s41598-018-27707-4, using Convolutional Neural Network to detect lung cancer tumor area☆49Updated 3 years ago
- 🔬 Code-free deep segmentation for computational pathology☆52Updated 5 months ago
- InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification☆41Updated last year
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆24Updated 3 months ago
- Deep Learning-based Frozen Section to FFPE Translation☆47Updated last month
- Coincides with blogpost for using geojson and shapely☆29Updated 3 years ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Updated 4 years ago
- ☆11Updated 5 years ago
- Train a model to predict gene expression from histology slides.☆94Updated 2 years ago
- Pan-cancer quantitative histopathology analysis using deep learning☆10Updated 2 years ago
- A set of codes to classify H&E slides using deep learning☆28Updated 2 years ago
- An introduction to deepcell and deep learning☆141Updated 3 weeks ago
- predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer☆100Updated 5 years ago
- Cloud-based data annotation tools for biological images☆76Updated 9 months ago
- An open-source digital pathology based rapid image annotation tool☆74Updated this week
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 3 years ago
- ☆30Updated 3 years ago
- ☆21Updated last year
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆79Updated 2 years ago