Alternatives and similar repositories for STAR:

Users that are interested in STAR are comparing it to the libraries listed below

• sniprbiome / PyVenus
  A python interface to the Venus environment, used to program Hamilton liquid handlers
  ☆16Updated 2 years ago
• dgretton / pyhamilton
  Python for Hamilton liquid handling robots
  ☆162Updated last week
• PyLabRobot / pylabrobot
  interactive & hardware agnostic SDK for lab automation
  ☆218Updated this week
• bionumpy / bionumpy
  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/
  ☆280Updated this week
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆114Updated 3 weeks ago
• IsaacLuo / SnapGeneFileReader
  A Python project to read and write Snapgene *.dna into dict, json, and biopython object.
  ☆39Updated 4 years ago
• manulera / OpenCloning
  An Open-Source web application to plan and document cloning and genome engineering
  ☆22Updated last week
• sphinxbio / platechain
  LLMs for microplate data
  ☆44Updated 5 months ago
• libnano / primer3-py
  Simple oligo analysis and primer design
  ☆176Updated last month
• pydna-group / pydna
  Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…
  ☆176Updated 2 weeks ago
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆38Updated this week
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆245Updated 5 months ago
• Benchling-Open-Source / allotropy
  A Python library for converting instrument data into Allotrope Simple Model (ASM)
  ☆63Updated this week
• TeselaGen / tg-oss
  Teselagen Open Source modules
  ☆55Updated last week
• evanpeikon / Bioinformatics_Toolkit
  A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessib…
  ☆204Updated this week
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆91Updated 7 months ago
• openvax / pyensembl
  Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
  ☆392Updated 9 months ago
• Bioprotocols / labop
  Laboratory Open Protocol (LabOP) Language
  ☆41Updated 5 months ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆135Updated 2 weeks ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆569Updated 7 months ago
• deeptools / pyBigWig
  A python extension for quick access to bigWig and bigBed files
  ☆226Updated 2 months ago
• iGEM-Engineering / iGEM-distribution
  Repository for collective design of an iGEM DNA distribution
  ☆43Updated last year
• whitews / FlowKit
  A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
  ☆170Updated this week
• omgenomics / bio-data-zoo
  Example genomics data for tool developers
  ☆111Updated 8 months ago
• ebi-webcomponents / nightingale
  Data visualisation web components for the life sciences.
  ☆128Updated this week
• ANHIG / IMGTHLA
  Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
  ☆224Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆77Updated this week
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆104Updated 4 months ago
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆238Updated 3 months ago
• mikessh / vdjtools
  [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
  ☆134Updated 10 months ago