A set of tutorials to introduce new users to the MoSDeF (Molecular Simulation Design Framework) toolkit
☆28Apr 1, 2024Updated last year
Alternatives and similar repositories for mosdef_tutorials
Users that are interested in mosdef_tutorials are comparing it to the libraries listed below
Sorting:
- A set of tutorials to introduce new users to mBuild☆11Jun 14, 2021Updated 4 years ago
- A lightweight package with the periodic table of the elements☆12Apr 1, 2021Updated 4 years ago
- Sample molecular simulation workflows using a MoSDeF and community tools☆16Jul 19, 2022Updated 3 years ago
- A package for atom-typing as well as applying and disseminating forcefields☆141Updated this week
- A hierarchical, component based molecule builder☆208Updated this week
- Supplementary Data for "A graph representation of molecular ensembles for polymer property prediction"☆22Oct 12, 2022Updated 3 years ago
- Learning free energy landscapes using artificial neural networks☆14Nov 30, 2017Updated 8 years ago
- MoSDeF-GOMC: Python software for the creation of scientific workflows for the Monte Carlo simulation engine GOMC☆17Feb 23, 2026Updated last week
- Create atomistic structures with ASE, rdkit and packmol☆24Feb 23, 2026Updated last week
- Summer 2020 reading group on uncertainty quantification☆23Jul 24, 2020Updated 5 years ago
- ☆20Feb 16, 2024Updated 2 years ago
- This program computes the sum-frequency generation (SFG) spectrum for a give MD trajectory of interfacial water molecules. The program ca…☆12Jul 24, 2023Updated 2 years ago
- A plugin that allows the use of Tensorflow in Hoomd-Blue for GPU-accelerated ML+MD☆33Aug 3, 2024Updated last year
- Supporting material for the paper "Data driven collective variables for enhanced sampling"☆20Jun 6, 2024Updated last year
- Python-based tool to calculate instantaneous interfaces and concentration/orientation profiles from molecular simulation trajectories in …☆12Nov 5, 2019Updated 6 years ago
- This repository is the used for teaching the Physical Chemistry Practicum about Molecular Dynamics (MD) simulations for pharmacy and biol…☆12May 7, 2025Updated 9 months ago
- NanoOpt: Deriving potentials for coarse-grained nanoparticles via potential-matching☆10Oct 8, 2021Updated 4 years ago
- Pykinetic is a project that aims to facilitate the automation and generation of kinetic and microkinetic models. Pykinetic acts as an int…☆11Jun 4, 2025Updated 8 months ago
- ☆21Dec 1, 2025Updated 3 months ago
- LigParGen python package version 2.3 (beta)☆13Apr 19, 2025Updated 10 months ago
- polyVERSE is a comprehensive repository of informatics-ready datasets curated by the Ramprasad Group.☆31Jan 21, 2026Updated last month
- A typo correction and word prediction borrowed from Android, made for Python, Linux, Mac, Windows ...☆17Nov 21, 2019Updated 6 years ago
- A generalized deep learning approach for local structure identification in molecular simulations. See https://doi.org/10.1039/C9SC02097G …☆17Jun 25, 2020Updated 5 years ago
- ☆14Jun 4, 2024Updated last year
- Jupyter book and content for "Machine Learning for Molecular Dynamics" course☆13Apr 7, 2022Updated 3 years ago
- Python wrapper for packmol molecule packing program☆12Jan 4, 2016Updated 10 years ago
- Examples for the freud library.☆14Updated this week
- Examples for the signac framework.☆15Feb 12, 2026Updated 2 weeks ago
- Automated BigSMILES conversion workflow and dataset for homopolymeric macromolecules☆18Jun 9, 2024Updated last year
- Physical validation of molecular simulations☆58Jan 5, 2026Updated last month
- DistMesh - A Simple Mesh Generator in MATLAB☆15Apr 29, 2013Updated 12 years ago
- A package for deriving coarse-grain potentials using MultiState Iterative Boltzmann Inversion (MS-IBI)☆18Dec 9, 2025Updated 2 months ago
- Rapidly visualize signac projects through a customizable dashboard interface.☆16Updated this week
- ☆16Oct 29, 2025Updated 4 months ago
- Atomistic Topology Operations in Matlab, scripts for manipulation of molecular dynamics or monte carlo simulation systems☆23Nov 27, 2025Updated 3 months ago
- Official repository for the paper "Higher-Rank Irreducible Cartesian Tensors for Equivariant Message Passing".☆18Dec 4, 2025Updated 2 months ago
- Distributed system for scaling quantum chemistry computations☆19Oct 15, 2025Updated 4 months ago
- Molecular simulation toolkit☆20Sep 17, 2025Updated 5 months ago
- ☆15Sep 1, 2023Updated 2 years ago