mosdef-hub / mosdef_tutorialsLinks
A set of tutorials to introduce new users to the MoSDeF (Molecular Simulation Design Framework) toolkit
☆27Updated last year
Alternatives and similar repositories for mosdef_tutorials
Users that are interested in mosdef_tutorials are comparing it to the libraries listed below
Sorting:
- ☆61Updated 4 months ago
- Automated workflow for generating quantum chemistry calculation of explicitly solvated molecules☆55Updated 3 months ago
- A wrapper to run xtb inside Gaussian.☆23Updated 5 years ago
- This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles☆45Updated 3 weeks ago
- ☆21Updated last month
- A set of tutorials to introduce new users to mBuild☆11Updated 4 years ago
- Quick Reaction Coordinate using Python☆39Updated last year
- Implementation of various machine learning representations for molecules☆25Updated 3 years ago
- Python wrapper for packmol molecule packing program☆12Updated 9 years ago
- AutoTST: A framework to perform automated transition state theory calculations☆44Updated last year
- An interactive structure viewer alongside its simulated diffraction pattern☆19Updated 3 weeks ago
- Stand-alone thermochemistry in python for ORCA and Gaussian.☆33Updated last year
- Machine learning exercises for the MolSim course (http://www.acmm.nl/molsim/molsim2023/index.html)☆28Updated last year
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆47Updated last year
- OpenMM plugin for simulating electrochemical systems☆21Updated last year
- A comprehensive tool for analyzing liquid solvation structure.☆54Updated last week
- Quantum Chemistry Web Platform☆71Updated 3 weeks ago
- A collection of interpretive chemical tools for analyzing outputs of the quantum chemistry calculations.☆53Updated last year
- a unified interface for molecular harmonic vibrational frequency calculations☆33Updated 4 months ago
- Code to compute Onsager transport coefficients from molecular dynamics simulations using mean-square displacements.☆29Updated 4 years ago
- Python interface for Enhanced Monte Carlo (EMC)☆21Updated last month
- Database of hand-built OPLS-AA parameters and topologies for 464 molecules. Zip files contains parameter and topologies for OpenMM, Groma…☆35Updated 7 years ago
- Flexible storage of chemical topology for molecular simulation☆67Updated this week
- Python code for learning Molecular Dynamics simulations☆53Updated 5 years ago
- MLP training for molecular systems☆54Updated 2 weeks ago
- Analyse Rotational Diffusion Tensor from MD Simulations☆22Updated last year
- A python utility to convert between XYZ and Z-matrix geometries.☆42Updated 3 years ago
- A codebase for classical molecular dynamics (MD) simulation setup and results analysis.☆26Updated last year
- ☆18Updated this week
- MolMod is a collection of molecular modelling tools for python.☆60Updated last year