openpathsampling / ops_tutorialLinks
Introductory tutorial on TPS, committor analysis, and (MS)TIS with OpenPathSampling
☆15Updated last year
Alternatives and similar repositories for ops_tutorial
Users that are interested in ops_tutorial are comparing it to the libraries listed below
Sorting:
- Enhanced sampling methods for molecular dynamics simulations☆39Updated 2 years ago
- Get access to our MD data files.☆29Updated last year
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆48Updated 3 years ago
- Repository for Chemical Perception Sampling Tools☆21Updated last year
- A Python library for constructing polymer topologies and coordinates☆16Updated 2 weeks ago
- Repository for MD methods and analysis from submitted or published work☆19Updated 2 years ago
- Code for performing adversarial attacks on atomistic systems using NN potentials☆40Updated 3 years ago
- Conformer-Rotamer Ensemble Sampling Tool based on the xtb Semiempirical Extended Tight-Binding Program Package☆35Updated 2 months ago
- Data and scripts for comprehensive benchmark of conformer relative energies☆25Updated 5 years ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆54Updated last year
- Accelerated sampling framework with autoencoder-based method☆23Updated 6 years ago
- ☆14Updated 5 years ago
- A light-weight PyTorch extension for equivariant deep learning☆17Updated 7 months ago
- Equivariant GNN for the prediction of atomic multipoles up to quadrupoles.☆30Updated 3 years ago
- PSP is a python toolkit for predicting atomic-level structural models for a range of polymer geometries.☆43Updated last year
- ☆25Updated 2 years ago
- ☆31Updated 3 years ago
- Computational Chemistry☆24Updated 3 months ago
- Geometric super-resolution for molecular geometries☆41Updated 3 years ago
- Automated reaction discovery and dataset generation with the growing string method☆20Updated 5 years ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆44Updated 5 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 4 years ago
- ☆31Updated last year
- ☆34Updated 2 months ago
- fast functionalisation of molecules☆37Updated 3 years ago
- A Newtonian message passing network for deep learning of interatomic potentials and forces☆45Updated 4 months ago
- Supplementary Data for "A graph representation of molecular ensembles for polymer property prediction"☆21Updated 3 years ago
- In-house tools for setting up arbitrary solute-solvent mixtures for simulation in GROMACS, Amber, OpenMM or other codes☆33Updated 4 years ago
- Python library for adaptive QM/MM methods☆28Updated 5 years ago
- Physical validation of molecular simulations☆57Updated this week