croningp / assemblyphysicsLinks
☆51Updated last year
Alternatives and similar repositories for assemblyphysics
Users that are interested in assemblyphysics are comparing it to the libraries listed below
Sorting:
- Cadnano2☆56Updated 5 months ago
- Benchmark for LLM-based Agents in Computational Biology☆46Updated last month
- ☆30Updated 2 years ago
- Evaluation dataset for AI systems intended to benchmark capabilities foundational to scientific research in biology☆66Updated last month
- ☆37Updated 8 months ago
- This repository contains the data and scripts necessary to reproduce the results presented in the paper: **"Scalable molecular simulation…☆47Updated last year
- molecular plots in Jupyter, powererd by Blender Geometry Nodes☆55Updated last year
- A modular compiler for biological chemical reaction networks☆47Updated last month
- Minimal AlphaFold☆53Updated 10 months ago
- ☆88Updated last year
- Mechanistically interpretable neurosymbolic AI (Nature Comput Sci 2024): losslessly compressing NNs to computer code and discovering new …☆90Updated last year
- Searching for structural similarities across billions of molecules in milliseconds☆82Updated last year
- Framework enabling modular interchange of language agents, environments, and optimizers☆97Updated this week
- Implementation of the Pairformer model used in AlphaFold 3☆13Updated this week
- ☆113Updated last month
- Automancer is a software application that enables researchers to design, automate, and manage their experiments.☆22Updated last year
- oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis☆54Updated 3 weeks ago
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆85Updated this week
- A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings☆55Updated last month
- An aviary-based data science agent based on jupyter notebooks☆34Updated last month
- Software for running the Chemputer in association with the supporting publication in Science☆101Updated 2 years ago
- bioinformatics tools running on modal☆92Updated 3 weeks ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆97Updated 2 years ago
- Representation Learning on Topological Domains☆81Updated last week
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 3 months ago
- Molecular dynamics simulations with an LLM agent☆196Updated 3 months ago
- The Cosmos numerical relativity code (with unstructured AMR)☆20Updated last year
- Combinatorial antibiotic generation☆179Updated 3 weeks ago
- ☆38Updated 8 months ago
- Streamlit Component for creating Speck molecular structures within Streamlit Web app.☆31Updated last year