aniketkt / CTSegNet
CTSegNet is an end-to-end 3D segmentation package for large X-ray tomographic datasets using 2D fully convolutional neural networks (fCNN).
☆26Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for CTSegNet
- 3D Slicer extension which contains a Segment Editor Effect that solidifies and extracts the surface of a segmentation☆29Updated 7 months ago
- Python TEASAR Skeletonization for Sparse Labels☆9Updated last year
- Automated quantification of fibrous networks☆10Updated 4 months ago
- Simulation of X-ray projections on GPU: benchmarking gVirtualXray with clinically realistic phantoms☆16Updated last year
- 2D image registration in python, using napari.☆16Updated 2 years ago
- Numerical techniques for ring artifact removal in tomography https://sarepy.readthedocs.io/☆47Updated last year
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆95Updated last week
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆32Updated 5 months ago
- X-ray imaging simulation☆32Updated last month
- Utilities for reading and writing files created by 3D Slicer☆34Updated 2 months ago
- Fill holes in binary 2D & 3D images fast.☆16Updated 5 months ago
- An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging stud…☆57Updated 2 weeks ago
- Simple scripts to reconstruct 3D objects from images based on Chan-Vese Segmentation and Marching Cube algorithm.☆10Updated 4 months ago
- tomography reconstruction on GPU☆20Updated last week
- A package for all projects of Medical Image processing at Vanderbilt (papers are in google drive)☆21Updated 6 years ago
- Segmentation of lungs in 3D Computed Tomography (CT) scans via non-rigid image registration☆23Updated 4 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆136Updated 3 months ago
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆73Updated 2 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆102Updated 6 months ago
- 3D Slicer Module for connecting to model repository and use models for image analysis.☆25Updated last year
- The cardiovascular repository contains C++ and Python programs useful for cardiovascular applications, in particular applications related…☆11Updated 2 months ago
- An implementation of morphological contour interpolation☆30Updated 2 months ago
- Multi-modal cochlea Images registration, segmentation and analysis☆13Updated 5 months ago
- Fast, Texture Feature Maps from N-Dimensional Images☆22Updated 4 months ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆53Updated 2 years ago
- Super Resolution 4D Flow MRI using Residual Neural Network☆38Updated last year
- Material for the 2020 MONAI Bootcamp☆65Updated 3 years ago
- The set of CPU/GPU optimised regularisation modules for iterative image reconstruction and other image processing tasks☆49Updated 2 months ago
- Level set segmentation with machine learning based velocity field☆41Updated 4 years ago
- TOmographic MOdel-BAsed Reconstruction (ToMoBAR) software☆50Updated this week