UCSB-VRL / bisqueUCSBLinks
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
☆39Updated 9 months ago
Alternatives and similar repositories for bisqueUCSB
Users that are interested in bisqueUCSB are comparing it to the libraries listed below
Sorting:
- Python module to analyse skeleton (thin object) images☆138Updated last month
- An open-source application for the analysis and visualization of segmented vasculature datasets☆123Updated last year
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆176Updated last week
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆52Updated last year
- Simple pure-python module for reading and writing nrrd files.☆123Updated 9 months ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆179Updated last week
- Image registration using pytorch☆184Updated last year
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆257Updated last month
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆120Updated last week
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆429Updated last week
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆109Updated 2 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 3 months ago
- 🌈☆65Updated 3 weeks ago
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆56Updated 4 months ago
- ☆92Updated 5 months ago
- Python modules to work with large multiresolution images.☆216Updated last week
- ☆242Updated last year
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Updated last year
- Utilities for reading and writing files created by 3D Slicer☆41Updated 9 months ago
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated 2 weeks ago
- Joint training of denoising and segmentation.☆75Updated 2 years ago
- ☆21Updated 4 years ago
- panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps☆26Updated last month
- Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning☆74Updated 4 years ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated last month
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- ☆100Updated last month
- Fill holes in binary 2D & 3D images fast.☆28Updated 2 months ago
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Updated 7 months ago
- NumPy and Tensorflow implementation of the Multidimensional Contrast Limited Adaptive Histogram Equalization (MCLAHE) procedure☆49Updated 3 years ago