UCSB-VRL / bisqueUCSBLinks
An ML Platform for storing, analyzing, and visualizing your data all in the browser.
☆40Updated 10 months ago
Alternatives and similar repositories for bisqueUCSB
Users that are interested in bisqueUCSB are comparing it to the libraries listed below
Sorting:
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆180Updated 2 weeks ago
- Python module to analyse skeleton (thin object) images☆138Updated last month
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Updated last month
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆183Updated this week
- Image registration using pytorch☆184Updated last year
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆434Updated 3 weeks ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆125Updated last year
- Command line tool for registration of very large 3D volumes.☆15Updated 2 years ago
- 🌈☆66Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 3 months ago
- The Biomedical Image Segmentation App is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed …☆56Updated this week
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆57Updated last month
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- 🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes☆52Updated last year
- Utilities for reading and writing files created by 3D Slicer☆41Updated 10 months ago
- Fill holes in binary 2D & 3D images fast.☆28Updated 2 months ago
- Pipeline for putting surface meshes into correspondence☆26Updated 2 years ago
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Updated last year
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆258Updated 2 months ago
- Automated quantification of fibrous networks☆12Updated 9 months ago
- an image registration/augmentation/segmentation package☆174Updated 2 years ago
- Read and write Neuroglancer datasets programmatically.☆166Updated last week
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆63Updated 2 months ago
- Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation☆54Updated 5 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated this week
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆260Updated this week
- WebGL-based viewer for volumetric data☆24Updated last week
- Simple pure-python module for reading and writing nrrd files.☆123Updated 10 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Simple watershed and agglomeration library for affinity graphs.☆25Updated 2 months ago