Alternatives and similar repositories for PyPSID:

Users that are interested in PyPSID are comparing it to the libraries listed below

• ShanechiLab / PSID
  Preferential Subspace Identification Algorithm
  ☆49Updated last year
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆50Updated last month
• egokcen / DLAG
  A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
  ☆29Updated 2 years ago
• spiketools / spiketools
  Tools for analyzing spiking data from single-neuron recodings.
  ☆26Updated last month
• mackelab / smc_rnns
  Code accompanying Inferring stochastic low-rank RNNs from neural data. @matthijspals
  ☆19Updated last week
• ShanechiLab / torchDFINE
  ☆29Updated last year
• glaserlab / sca
  Sparse Component Analysis: An unsupervised method for recovering interpretable latent factors
  ☆27Updated 2 months ago
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆48Updated 7 months ago
• snel-repo / ComputationThroughDynamicsBenchmark
  ☆21Updated 2 months ago
• rajanlab / CURBD
  Code to train and analyze multi-region data-constrained RNNs and perform Current-Based Decomposition (CURBD)
  ☆52Updated 4 years ago
• ahwillia / tensortools
  A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA
  ☆34Updated last year
• egokcen / mDLAG
  A dimensionality reduction framework for characterizing the multi-dimensional, concurrent flow of signals across multiple neuronal popula…
  ☆15Updated 2 weeks ago
• DurstewitzLab / CNS-2023
  A Guide to Reconstructing Dynamical Systems from Neural Measurements Using Recurrent Neural Networks
  ☆36Updated last year
• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆47Updated last year
• pillowlab / GLMspiketraintutorial_python
  ☆50Updated 2 years ago
• Dynamics-of-Neural-Systems-Lab / MARBLE
  Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portr…
  ☆62Updated 2 months ago
• beteje / LFP_Analysis
  MATLAB code for local field potential analysis
  ☆19Updated 2 years ago
• bantin / jPCA
  jPCA for Neural Data Analysis in Python
  ☆48Updated last year
• ayalab1 / neurocode
  Code for neural and behavioral data analysis from the Brain Computation and Behavior Lab, aka AyA Lab, at Cornell University.
  ☆17Updated this week
• sandervanbree / braintime
  Brain Time Toolbox: Warp electrophysiological data from clock time to brain time and analyze the dynamic neural patterns of cognitive pro…
  ☆41Updated 2 years ago
• schultzlab / Neural_Manifolds
  A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and di…
  ☆25Updated last year
• irisstone / glmhmm
  code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)
  ☆29Updated 8 months ago
• neurallatents / nlb_workshop
  ☆20Updated 3 years ago
• snel-repo / falcon-challenge
  ☆14Updated 3 weeks ago
• lcbarnett / MVGC1
  The MVGC Multivariate Granger Causality toolbox for Granger-causal inference from time-series data.
  ☆16Updated 2 months ago
• NII-Kobayashi / GLMCC
  GLMCC: The generalized linear model for spike cross-correlation (Kobayashi et al., Nature Communications, 2019)
  ☆35Updated 2 years ago
• jniediek / combinato
  Automatic spike sorting, cluster visualization, spike sorting GUIs
  ☆44Updated last year
• flatironinstitute / spikeforest2
  SpikeForest -- spike sorting analysis for website -- version 2
  ☆34Updated 2 years ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆37Updated 5 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆45Updated 5 years ago