Alternatives and similar repositories for PyPSID

Users that are interested in PyPSID are comparing it to the libraries listed below

• egokcen / DLAG
  A dimensionality reduction framework for disentangling the flow of signals between populations of neurons
  ☆32Updated 2 months ago
• ShanechiLab / PSID
  Preferential Subspace Identification Algorithm
  ☆52Updated last year
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆53Updated 4 months ago
• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆49Updated last year
• glaserlab / sca
  Sparse Component Analysis: An unsupervised method for recovering interpretable latent factors
  ☆28Updated 5 months ago
• egokcen / mDLAG
  A dimensionality reduction framework for characterizing the multi-dimensional, concurrent flow of signals across multiple neuronal popula…
  ☆16Updated 3 months ago
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆49Updated 9 months ago
• bantin / jPCA
  jPCA for Neural Data Analysis in Python
  ☆50Updated 2 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆46Updated 5 years ago
• rajanlab / CURBD
  Code to train and analyze multi-region data-constrained RNNs and perform Current-Based Decomposition (CURBD)
  ☆53Updated 4 years ago
• mackelab / smc_rnns
  Code accompanying Inferring stochastic low-rank RNNs from neural data. @matthijspals
  ☆21Updated 3 months ago
• spiketools / spiketools
  Tools for analyzing spiking data from single-neuron recodings.
  ☆27Updated 3 weeks ago
• DurstewitzLab / CNS-2023
  A Guide to Reconstructing Dynamical Systems from Neural Measurements Using Recurrent Neural Networks
  ☆38Updated last year
• pillowlab / GLMspiketraintutorial_python
  ☆55Updated 2 years ago
• ShanechiLab / torchDFINE
  ☆30Updated last year
• snel-repo / ComputationThroughDynamicsBenchmark
  ☆22Updated last month
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆42Updated 5 years ago
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆70Updated 5 years ago
• nmtimme / Neuroscience-Information-Theory-Toolbox
  A MATLAB toolbox for performing information theory analyses of neuroscience data
  ☆74Updated 7 years ago
• Dynamics-of-Neural-Systems-Lab / MARBLE
  Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portr…
  ☆75Updated 4 months ago
• adredish / MClust-Spike-Sorting-Toolbox
  MClust is a Matlab-based spike sorting toolbox for the separation of putative cells from multi-site neurophysiological recordings. It is…
  ☆17Updated 2 years ago
• NII-Kobayashi / GLMCC
  GLMCC: The generalized linear model for spike cross-correlation (Kobayashi et al., Nature Communications, 2019)
  ☆35Updated 2 years ago
• ahwillia / tensortools
  A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA
  ☆35Updated last year
• arsedler9 / lfads-torch
  A PyTorch implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.
  ☆106Updated 5 months ago
• ayalab1 / neurocode
  Code for neural and behavioral data analysis from the Brain Computation and Behavior Lab, aka AyA Lab, at Cornell University.
  ☆17Updated this week
• Eden-Kramer-Lab / spectral_connectivity
  Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
  ☆129Updated 2 months ago
• irisstone / glmhmm
  code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)
  ☆30Updated 11 months ago
• murthylab / GLMHMM
  ☆23Updated 5 years ago
• schultzlab / Neural_Manifolds
  A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and di…
  ☆25Updated last year
• ShanechiLab / DPAD
  ☆52Updated 2 weeks ago