Sept-naf / gromacs-tutorialsLinks
☆23Updated 2 months ago
Alternatives and similar repositories for gromacs-tutorials
Users that are interested in gromacs-tutorials are comparing it to the libraries listed below
Sorting:
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆74Updated 10 months ago
- some scripts for analysis of MD and CADD. And some tutorials.☆54Updated 10 months ago
- binding free energy estimator 2☆119Updated 3 weeks ago
- Incorporation of conformational space profile into molecular representation learning, and its application to drug discovery, including vi…☆53Updated last month
- Easy to get started with molecular dynamics simulation.☆56Updated last week
- ☆113Updated 10 months ago
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆59Updated 7 months ago
- ☆51Updated 3 months ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆190Updated last year
- ☆35Updated last year
- implicit or explicit water model based docking with Autodock vina engine. supporting pharmacophore /position constrained docking☆65Updated 2 months ago
- A universal structure-directed lead optimization☆44Updated 2 months ago
- ☆39Updated 11 months ago
- ☆19Updated last year
- ☆101Updated 2 years ago
- Graph variational encoders for drug engineering and potentiation☆29Updated last year
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆77Updated 2 years ago
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆55Updated 2 months ago
- Pipeline converting PDB files to docking-ready PDBQT format☆17Updated 2 months ago
- FEP-SPell-ABFE: An Open Source Alchemical Absolute Binding Free Energy Calculation Workflow for Drug Discovery☆66Updated 5 months ago
- ☆60Updated last year
- Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta☆76Updated 2 months ago
- ☆65Updated last year
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆135Updated last week
- Multi_CycGT: A DL-Based Multimodal Model for Membrane Permeability Prediction of Cyclic Peptides☆14Updated 6 months ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆65Updated last year
- DeepFrag is a deep convolutional neural network that guides ligand optimization by extending a ligand with a molecular fragment, such tha…☆25Updated last year
- ☆76Updated 3 years ago
- The Free Energy Landscape Analysis tool offers a comprehensive suite for analyzing and visualizing the free energy landscape derived from…☆21Updated 4 months ago
- DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.☆42Updated last year