Gromacs tutorial PPTs and mdp files, also some plotting scripts
☆71Jun 5, 2026Updated 4 months ago
Alternatives and similar repositories for gromacs-tutorials
Users that are interested in gromacs-tutorials are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rosetta翻译☆32Dec 7, 2022Updated 3 years ago
- ☆24Oct 8, 2026Updated last week
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆20Aug 20, 2021Updated 5 years ago
- Fragment Linker Prediction Using Deep Encoder-Decoder Network for PROTAC Drug Design☆13Oct 2, 2023Updated 3 years ago
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆116Aug 18, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆69Oct 29, 2022Updated 3 years ago
- LABind: Identifying Protein Binding Ligand-Aware Sites via Learning Interactions Between Ligand and Protein☆18Aug 21, 2025Updated last year
- Code for "IDL-PPBopt: A Strategy for Prediction and Optimization of Human Plasma Protein Binding of Compounds via an Interpretable Deep L…☆11Apr 1, 2023Updated 3 years ago
- A tutorial for Streamlined Alchemical Free Energy Perturbations with NAMD☆17Apr 3, 2026Updated 6 months ago
- A program analyzing 3D protein structures from PDB to generate 2D binding motifs☆17Jul 18, 2021Updated 5 years ago
- MDplot: Visualise Molecular Dynamics☆32Mar 23, 2022Updated 4 years ago
- ☆30Aug 4, 2025Updated last year
- Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse☆12Feb 22, 2024Updated 2 years ago
- Self explained tutorial for molecular dynamics simulation using gromacs☆64Nov 16, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- The gmx_rrcs script is designed to calculate the residues-residues contact scores (rrcs) from a trajectory file generated by GROMACS.☆19Jun 16, 2025Updated last year
- Script to check required packages for Schrödinger suite on Linux machine☆13Sep 17, 2026Updated last month
- 分子动力学模拟后处理python脚本☆27Sep 18, 2025Updated last year
- Interface enabling use of ANI-style, and other NN-IPs in the Amber molecular dynamics software suite. Works with both Amber engines, sand…☆18Sep 21, 2026Updated 3 weeks ago
- ☆21Feb 14, 2025Updated last year
- EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation☆11Jul 28, 2022Updated 4 years ago
- ☆32Mar 21, 2025Updated last year
- A bare-metal Python library for building and manipulating the molecular structures of proteins, nucleic acids, and small organic molecule…☆20Updated this week
- An Integrated VMD Graphical User Interface for Molecular Packing☆34Dec 28, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆51Mar 21, 2024Updated 2 years ago
- ☆14Jun 11, 2023Updated 3 years ago
- Genetic algorithm to convert 3D-RISM solvent densities to explicit water molecules in binding pockets☆13Dec 19, 2017Updated 8 years ago
- an autoregressive flow model incorporated with chemical acknowledge for generating drug-like molecules inside protein pockets☆165May 14, 2025Updated last year
- Enhanced protein mutational sampling using time-lagged variational autoencoders☆30Sep 17, 2018Updated 8 years ago
- McDock: Simple Monte Carlo docking algorithm in C++☆11Feb 10, 2017Updated 9 years ago
- predict stability change upon mutation☆33Jun 28, 2024Updated 2 years ago
- ☆10Jun 10, 2024Updated 2 years ago
- tools for GROMACS☆150Jul 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Jul 31, 2020Updated 6 years ago
- ☆16Apr 9, 2026Updated 6 months ago
- ☆14Dec 16, 2022Updated 3 years ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆46Jun 17, 2024Updated 2 years ago
- An extended variant of idock which was originally developed by @HongjianLi.☆10Mar 21, 2022Updated 4 years ago
- Plotting graphs from XVGs generated by GROMACS in Python☆37Oct 4, 2026Updated 2 weeks ago
- ☆42Feb 28, 2022Updated 4 years ago