Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready curation of the Protein Data Bank (PDB) for NANOBODY® VHH and antibody complex structures.
☆35Jun 8, 2026Updated 2 months ago
Alternatives and similar repositories for SNAC-DB
Users that are interested in SNAC-DB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆15May 26, 2026Updated 3 months ago
- few-shot compound activity regression☆12Aug 19, 2024Updated 2 years ago
- [ICLR'26] Towards All-Atom Foundation Models for Biomolecular Binding Affinity Prediction☆23Jul 9, 2026Updated last month
- de novo design of high affinity biological binders☆198Aug 11, 2026Updated 2 weeks ago
- Target prediction☆14May 8, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Associated code/pipeline for the publication "AI-assisted protein design to rapidly convert antibody sequences to intrabodies targeting d…☆16Feb 18, 2025Updated last year
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11May 19, 2023Updated 3 years ago
- An antibody-specific language model focusing on NGL prediction☆31Mar 8, 2025Updated last year
- Humanness of de-novo designed proteins☆47May 19, 2025Updated last year
- PyRosetta4 v2026-02-06 with (Global Interpreter Lock) disabled☆20Mar 22, 2026Updated 5 months ago
- Mutation-centric "Interaction Language Model" for Edgetic PPI prediction☆16May 28, 2026Updated 3 months ago
- ☆27May 16, 2026Updated 3 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆281Apr 24, 2026Updated 4 months ago
- Official implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design☆48Jan 8, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Environment for developing substructure-aware protein models☆16Mar 26, 2026Updated 5 months ago
- AI model and framework for scoring antibody-antigen complexes☆26Jul 29, 2026Updated last month
- Official Implementation of IgGM☆222May 28, 2026Updated 3 months ago
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆26Jul 14, 2025Updated last year
- Code for Nanodesigner: resolving the complex-CDR interdependency with iterative refinement paper☆17Aug 17, 2025Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆138Jan 28, 2026Updated 7 months ago
- ☆15Mar 5, 2026Updated 5 months ago
- ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of ant…☆46Nov 8, 2024Updated last year
- ☆21Nov 21, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- [𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆49Mar 5, 2026Updated 5 months ago
- AbLang: A language model for antibodies☆171Sep 22, 2023Updated 2 years ago
- ☆18Jun 1, 2026Updated 2 months ago
- ☆13Nov 12, 2021Updated 4 years ago
- DualBind is a 3D structure-based deep learning model with a dual-loss framework for accurate and fast protein-ligand binding affinity pre…☆25Oct 21, 2025Updated 10 months ago
- ☆17Jan 5, 2024Updated 2 years ago
- Fitness landscapes for antibodies☆192Aug 17, 2026Updated last week
- Reinforcement learning based cyclic peptide binder design☆20Jul 22, 2025Updated last year
- CLIP-based model for aligning epitopes to immune receptors☆11Apr 30, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆261Jan 3, 2026Updated 7 months ago
- Code for humanization of antibody and nanobody☆94Aug 28, 2025Updated last year
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- Codes for our paper "Programming Biomolecular Interactions with All-Atom Generative Model"☆89Jun 6, 2026Updated 2 months ago
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆64Mar 23, 2026Updated 5 months ago
- Peptide <-> SMILES utilities for monomer peptides with non-canonical residues, terminal modifications, and selected cyclizations.☆19Jul 21, 2026Updated last month
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Jul 9, 2024Updated 2 years ago