NeuroDesk / neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
☆27Updated this week
Alternatives and similar repositories for neurocontainers
Users that are interested in neurocontainers are comparing it to the libraries listed below
Sorting:
- The plug-and-play, browser-accessible, containerised data analysis environment.☆47Updated this week
- dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…☆67Updated last year
- A web service for semi-automated conversion of raw imaging data to BIDS☆30Updated last month
- a standalone fork of nipy/nibabel#656☆31Updated 2 weeks ago
- Common workflows for MRI (anatomical, functional, diffusion, etc)☆96Updated last week
- Modern Neuroimaging Made Simple☆13Updated 2 weeks ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆38Updated this week
- precon_all surface pipline☆21Updated last month
- Processing tools for high-resolution neuroimaging☆71Updated 5 months ago
- BIDS app wrapping recon-all from FreeSurfer☆41Updated 6 months ago
- A Python implementation of 'dual-coding'☆41Updated last year
- Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data☆76Updated 4 years ago
- A flexible, scalable, and easy to use data analysis environment for reproducible neuroimaging☆40Updated 2 weeks ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆69Updated last week
- fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI☆31Updated this week
- Non-linear warps between common rhesus macaque brain templates☆25Updated last year
- PNH segmentation pipelines based on nipype☆22Updated 2 weeks ago
- VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.☆73Updated 10 months ago
- QSMxT is an end-to-end software toolbox for Quantitative Susceptibility Mapping.☆45Updated last week
- Repository for Nipraxis course textbook☆14Updated last year
- Website for the 2021 OHBM Hackathon☆22Updated 2 years ago
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆27Updated 2 weeks ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆57Updated 2 years ago
- The TemplateFlow Archive - A DataLad super-dataset☆79Updated last week
- A Rat fMRI multi-center study☆33Updated 2 years ago
- Bootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique☆26Updated 5 years ago
- BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)☆58Updated this week
- Interactive and static 3D visualisation for functional brain mapping☆9Updated 7 months ago
- niimath - a clone of fslmaths. Try the live demo:☆61Updated this week
- Schedule and resources from the OHBM Open Science Room: Rome 2019☆16Updated 5 years ago