implementation of dynamic wavelet matrix(tree) and static wavelet matrix
☆25Jun 4, 2019Updated 7 years ago
Alternatives and similar repositories for WaveletMatrix
Users that are interested in WaveletMatrix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parallel Wavelet Tree and Wavelet Matrix Construction☆26Jun 27, 2023Updated 3 years ago
- Wavelet Matrix implementation written in Rust☆17Sep 13, 2022Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- A lightweight suffix-sorting library enhanced with LCP construction☆13Mar 26, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Online construction of run-length BWT (RLBWT) and r-index. Plus, online LZ77 parsing based on RLBWT.☆14May 11, 2018Updated 8 years ago
- Universe-sliced indexes in C++.☆18Jan 8, 2023Updated 3 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- A word-aligned integer compression algorithm.☆13Jul 8, 2024Updated 2 years ago
- Unified diff parsing/metadata extraction library for Rust☆34Updated this week
- ☆20Aug 18, 2020Updated 5 years ago
- ☆11May 1, 2021Updated 5 years ago
- Paper Collection for Stringologists☆17Jul 10, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Pan-genome Seed Index☆20Jul 3, 2026Updated 2 weeks ago
- Succinct Data Structures for Rust☆58Jun 8, 2025Updated last year
- Height map to normal map converter for Unity☆13Mar 8, 2018Updated 8 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Python-like decorator in Rust☆15May 14, 2020Updated 6 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Feb 29, 2020Updated 6 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆24Apr 2, 2021Updated 5 years ago
- cross-platform Rust API for memory mapped IO☆10Sep 25, 2020Updated 5 years ago
- Space efficient (graph) algorithms☆18Sep 10, 2020Updated 5 years ago
- ☆26Jul 1, 2026Updated 2 weeks ago
- Next-Generation Sequencing (NGS) Data Processing Tool & Library☆10May 9, 2023Updated 3 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- 🔶 Compressed bitvector/container supporting efficient random access and rank queries☆46Sep 4, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A graph aligner☆31Sep 17, 2024Updated last year
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Microbenchmarks for Aarch64 (Cortex A53)☆12Apr 19, 2023Updated 3 years ago
- Wavelet tree based on a fixed block boosting technique☆16May 18, 2021Updated 5 years ago
- Succinct Data Structure Library 3.0☆107Jul 1, 2026Updated 2 weeks ago
- ☆14Jan 31, 2020Updated 6 years ago
- Rust tools for working with UEFI SBAT☆20Jul 2, 2026Updated 2 weeks ago