tools for GROMACS
☆149Jul 11, 2025Updated last year
Alternatives and similar repositories for gmxtools
Users that are interested in gmxtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆112Apr 28, 2026Updated 3 months ago
- LiveCoMS GROMACS Tutorials Paper☆146Aug 1, 2026Updated 2 weeks ago
- ☆92Dec 24, 2025Updated 7 months ago
- Gromacs to Lammps simulation converter☆95Dec 9, 2023Updated 2 years ago
- Data and script of Umbrella Sampling for molecular transmembrane☆14Jun 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.☆325Jul 31, 2026Updated 2 weeks ago
- some scripts for analysis of MD and CADD. And some tutorials.☆63Aug 12, 2024Updated 2 years ago
- Conversion tool for molecular simulations☆230Jan 22, 2026Updated 6 months ago
- molecular dynamics simulation and analysis. 分子动力学模拟和分析。☆41Oct 3, 2019Updated 6 years ago
- For the purpose of post progressing of MD carried by gromacs☆24Jul 2, 2025Updated last year
- A collection of scripts which I have developed to use GROMACS, for both compute clusters and post-simulation analysis.☆11Jul 15, 2014Updated 12 years ago
- Dockerfile for GROMACS☆52Jun 29, 2023Updated 3 years ago
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆47May 3, 2021Updated 5 years ago
- Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/…☆949Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆210Sep 22, 2023Updated 2 years ago
- The gmx_rrcs script is designed to calculate the residues-residues contact scores (rrcs) from a trajectory file generated by GROMACS.☆18Jun 16, 2025Updated last year
- ☆17Jul 28, 2022Updated 4 years ago
- Protocols for running MD simulations in Gromacs☆11Jun 18, 2024Updated 2 years ago
- Analysis of contacts in molecular dynamics trajectories☆48Nov 4, 2019Updated 6 years ago
- ☆24Jan 16, 2024Updated 2 years ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆85Apr 6, 2025Updated last year
- This repository contained python code used to do organic free energy calculation. Reference: http://www.bevanlab.biochem.vt.edu/Pages/Per…☆11Aug 2, 2018Updated 8 years ago
- GridMAT-MD membrane analysis program☆26Sep 15, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Jul 31, 2020Updated 6 years ago
- Scripts for running alchemical, free-energy perturbation simulations using Gromacs☆18Feb 27, 2018Updated 8 years ago
- Trusted force field files for gromacs☆73Oct 31, 2024Updated last year
- Parameter/topology editor and molecular simulator☆452Jul 1, 2026Updated last month
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 4 years ago
- ☆23Jul 29, 2026Updated 2 weeks ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆66Aug 2, 2025Updated last year
- Implementation of MOFF force field. Please cite us at Latham, A; Zhang, B J. Chem. Theory Comput. 2021, 17, 3134. (https://pubs.acs.org/d…☆11Jun 16, 2022Updated 4 years ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Oct 27, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Coarse-grained simulations of biomolecular complexes☆13Aug 2, 2023Updated 3 years ago
- Ionic liquid force field parameters (OPLS-2009IL and OPLS-VSIL)☆80May 28, 2026Updated 2 months ago
- Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates☆195Updated this week
- A ready-to-use energy diagram drawing program☆13Nov 23, 2023Updated 2 years ago
- Tutorials on doing AMBER based Metadynamics and Gaussian Accelerated MD (GaMD)☆13Dec 1, 2025Updated 8 months ago
- Software for automated processing of alchemical free energy calculations☆12Nov 7, 2022Updated 3 years ago
- Collection of interaction and molecule parameters for the Martini3 force-field☆22Feb 7, 2023Updated 3 years ago