Jerkwin / gmxtools

Related projects: ⓘ

• CharlesHahn / DuIvyTools
  A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).
  ☆56Updated last month
• CharlesHahn / DuIvy
  some scripts for analysis of MD and CADD. And some tutorials.
  ☆47Updated last month
• liyigerry / gmx
  molecular dynamics simulation and analysis. 分子动力学模拟和分析。
  ☆33Updated 4 years ago
• fhh2626 / BFEE2
  binding free energy estimator 2
  ☆101Updated last month
• deGrootLab / pmx
  Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
  ☆131Updated last month
• ricalessandri / Martini3-small-molecules
  Martini 3 small-molecule database
  ☆54Updated 3 weeks ago
• jalemkul / gmx_tutorials_livecoms
  LiveCoMS GROMACS Tutorials Paper
  ☆105Updated 5 years ago
• huichenggong / Learning-Computation-with-Chenggong
  ☆38Updated 2 months ago
• jalemkul / gridmat-md
  GridMAT-MD membrane analysis program
  ☆23Updated 6 years ago
• CCPBioSim / qmmm-workshop
  Workshop teaching QMMM using Amber
  ☆53Updated 2 years ago
• marrink-lab / vermouth-martinize
  Describe and apply transformation on molecular structures and topologies
  ☆94Updated last week
• luancarvalhomartins / PyAutoFEP
  PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods
  ☆158Updated 11 months ago
• lmmpf / PyAutoFEP
  PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods
  ☆73Updated last year
• alanwilter / acpype
  OFFICIAL: AnteChamber PYthon Parser interfacE
  ☆196Updated this week
• callumjd / AMBER-Membrane_protein_tutorial
  Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen
  ☆51Updated last year
• mpurg / qtools
  a Python library and CLI for the molecular dynamics simulation package Q
  ☆20Updated 9 months ago
• bioexcel / gromacs-2022-cp2k-tutorial
  Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface
  ☆28Updated 2 years ago
• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆124Updated 6 months ago
• tubiana / TTClust
  clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)
  ☆104Updated 4 months ago
• NNairIITK / Enhanced_Sampling_Methods_Tutorials
  Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..
  ☆40Updated 3 years ago
• Valdes-Tresanco-MS / gmx_MMPBSA
  gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
  ☆215Updated 4 months ago
• Tsjerk / Insane
  INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
  ☆42Updated 5 months ago
• wlsong / PyLipID
  A python toolkit for analysing membrane protein-lipid interactions.
  ☆58Updated last year
• MiaoLab20 / gamd-openmm
  Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…
  ☆66Updated 3 months ago
• markusfleck / PARENT
  PARENT: a parallel software suite for the calculation of configurational entropy in biomolecular systems
  ☆13Updated 2 years ago
• intbio / gromacs_ff
  Trusted force field files for gromacs
  ☆38Updated 2 months ago
• YAMACS-SML / YAMACS
  Yasara plugins for Gromacs users
  ☆23Updated 8 months ago
• alchemistry / alchemlyb
  the simple alchemistry library
  ☆191Updated this week
• CCPBioSim / fesetup
  A tool for setting up free energy simulations.
  ☆34Updated last year
• maccallumlab / martini_openmm
  ☆47Updated last year