Jerkwin / gmxtoolsLinks
tools for GROMACS
☆138Updated 6 months ago
Alternatives and similar repositories for gmxtools
Users that are interested in gmxtools are comparing it to the libraries listed below
Sorting:
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆92Updated 3 months ago
- binding free energy estimator 2☆137Updated 2 weeks ago
- LiveCoMS GROMACS Tutorials Paper☆137Updated 6 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆169Updated 2 weeks ago
- some scripts for analysis of MD and CADD. And some tutorials.☆61Updated last year
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆166Updated 2 months ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆204Updated 2 years ago
- OFFICIAL: AnteChamber PYthon Parser interfacE☆245Updated 3 weeks ago
- clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)☆126Updated last year
- Describe and apply transformation on molecular structures and topologies☆139Updated 2 weeks ago
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated last week
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆73Updated 2 years ago
- gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.☆292Updated 2 months ago
- DynamiSpectra: Decode molecular motion with precision and power☆20Updated 4 months ago
- Trusted force field files for gromacs☆68Updated last year
- Martini 3 small molecule database☆70Updated 4 months ago
- ☆40Updated last year
- molecular dynamics simulation and analysis. 分子动力学模拟和分析。☆41Updated 6 years ago
- OpenMM tutorial for the MSBS course☆183Updated 2 weeks ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆92Updated 6 months ago
- Yasara plugins for Gromacs users☆33Updated 2 years ago
- Easy to get started with molecular dynamics simulation.☆62Updated 7 months ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆82Updated 2 years ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆60Updated 6 months ago
- Free Energy Landscape analysis tool.☆28Updated 11 months ago
- An open tool implementing some recommended practices for analyzing alchemical free energy calculations☆135Updated last year
- Python scripts to convert CGenFF stream files to GROMACS format☆45Updated last month
- A tool for setting up free energy simulations.☆36Updated 3 years ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆138Updated 2 years ago
- A python toolkit for analysing membrane protein-lipid interactions.☆69Updated 3 months ago