Jerkwin / gmxtoolsLinks
tools for GROMACS
☆124Updated 2 months ago
Alternatives and similar repositories for gmxtools
Users that are interested in gmxtools are comparing it to the libraries listed below
Sorting:
- A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).☆82Updated last year
- LiveCoMS GROMACS Tutorials Paper☆126Updated 6 years ago
- binding free energy estimator 2☆128Updated last week
- OFFICIAL: AnteChamber PYthon Parser interfacE☆235Updated 3 months ago
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆154Updated 7 months ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆159Updated last month
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆194Updated 2 years ago
- some scripts for analysis of MD and CADD. And some tutorials.☆59Updated last year
- clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)☆117Updated last year
- Describe and apply transformation on molecular structures and topologies☆121Updated last week
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆67Updated this week
- gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.☆273Updated 3 months ago
- Martini 3 small molecule database☆65Updated this week
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆84Updated 2 months ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆67Updated 2 years ago
- Yasara plugins for Gromacs users☆32Updated last year
- The Free Energy Landscape Analysis tool offers a comprehensive suite for analyzing and visualizing the free energy landscape derived from…☆25Updated 7 months ago
- Python workflow for DP5 and DP4 analysis of organic molecules☆192Updated last year
- Visual Interactive Analysis of Molecular Dynamics☆307Updated this week
- A tool for setting up free energy simulations.☆36Updated 2 years ago
- OpenMM tutorial for the MSBS course☆176Updated last week
- ☆39Updated last year
- Trusted force field files for gromacs☆59Updated 11 months ago
- molecular dynamics simulation and analysis. 分子动力学模拟和分析。☆41Updated 6 years ago
- GridMAT-MD membrane analysis program☆25Updated 7 years ago
- Interactive data analysis and visualisation with chemical intelligence☆127Updated 3 weeks ago
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆65Updated last year
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆79Updated 2 years ago
- Software for biomolecular electrostatics and solvation calculations☆111Updated last year
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆37Updated 3 years ago