Alternatives and similar repositories for gmxtools

Users that are interested in gmxtools are comparing it to the libraries listed below

• CharlesHahn / DuIvyTools
  A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).
  ☆77Updated 10 months ago
• fhh2626 / BFEE2
  binding free energy estimator 2
  ☆121Updated last month
• jalemkul / gmx_tutorials_livecoms
  LiveCoMS GROMACS Tutorials Paper
  ☆119Updated 6 years ago
• deGrootLab / pmx
  Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
  ☆151Updated last week
• CharlesHahn / DuIvy
  some scripts for analysis of MD and CADD. And some tutorials.
  ☆57Updated 11 months ago
• luancarvalhomartins / PyAutoFEP
  PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods
  ☆190Updated last year
• alanwilter / acpype
  OFFICIAL: AnteChamber PYthon Parser interfacE
  ☆231Updated last month
• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆150Updated 4 months ago
• tubiana / TTClust
  clusterize molecular dynamic trajectories (amber, gromacs, charmm, namd, pdb...)
  ☆115Updated last year
• marrink-lab / vermouth-martinize
  Describe and apply transformation on molecular structures and topologies
  ☆115Updated last week
• ricalessandri / Martini3-small-molecules
  Martini 3 small-molecule database
  ☆62Updated 10 months ago
• liyigerry / gmx
  molecular dynamics simulation and analysis. 分子动力学模拟和分析。
  ☆40Updated 5 years ago
• CCPBioSim / qmmm-workshop
  Workshop teaching QMMM using Amber
  ☆63Updated 2 years ago
• intbio / gromacs_ff
  Trusted force field files for gromacs
  ☆53Updated 8 months ago
• MiaoLab20 / gamd-openmm
  Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…
  ☆83Updated 3 weeks ago
• huichenggong / Learning-Computation-with-Chenggong
  ☆39Updated 11 months ago
• sulfierry / free_energy_landscape
  The Free Energy Landscape Analysis tool offers a comprehensive suite for analyzing and visualizing the free energy landscape derived from…
  ☆21Updated 5 months ago
• Hsuchein / AutoFEP_For_GMX
  ☆20Updated last year
• Valdes-Tresanco-MS / gmx_MMPBSA
  gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
  ☆266Updated last week
• jalemkul / gridmat-md
  GridMAT-MD membrane analysis program
  ☆25Updated 6 years ago
• abeebyekeen / CHAPERONg
  CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses
  ☆49Updated 6 months ago
• CCPBioSim / fesetup
  A tool for setting up free energy simulations.
  ☆35Updated 2 years ago
• molmod / openmm-tutorial-msbs
  OpenMM tutorial for the MSBS course
  ☆166Updated last week
• MobleyLab / alchemical-analysis
  An open tool implementing some recommended practices for analyzing alchemical free energy calculations
  ☆128Updated last year
• lmmpf / PyAutoFEP
  PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods
  ☆77Updated 2 years ago
• bestlab / force_fields
  Force fields in various formats
  ☆26Updated last year
• YAMACS-SML / YAMACS
  Yasara plugins for Gromacs users
  ☆29Updated last year
• Tsjerk / Insane
  INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems
  ☆65Updated last year
• mpurg / qtools
  a Python library and CLI for the molecular dynamics simulation package Q
  ☆20Updated last year
• alchemistry / alchemlyb
  the simple alchemistry library
  ☆217Updated this week