DeepBranchTracer: A Generally-Applicable Approach to Curvilinear Structure Reconstruction Using Multi-Feature Learning
☆12Jul 29, 2024Updated last year
Alternatives and similar repositories for DeepBranchTracer
Users that are interested in DeepBranchTracer are comparing it to the libraries listed below
Sorting:
- Data preprocessing for CCTA☆14May 29, 2025Updated 9 months ago
- This is an official implementation of the MICCAI2024 paper "Self-supervised 3D Skeleton Completion for Vascular Structures".☆18Jun 10, 2025Updated 9 months ago
- PyNeval, a toolbox for quantative analysis on neuron reconstruction result.☆17Nov 18, 2021Updated 4 years ago
- Research Paper - Automated Labelling of Coronary Vessels via Neural Network☆10Oct 12, 2020Updated 5 years ago
- Code for MICCAI 2023 paper: Robust Segmentation via Topology Violation Detection and Feature Synthesis☆28Oct 9, 2025Updated 5 months ago
- Model for finding a centerline distance map of blood vessel segmentations to then be fed into a graph minimum path extractor to find the …☆17May 2, 2022Updated 3 years ago
- The code of our paper 'Deep Closing: Enhancing Topological Connectivity in Medical Tubular Segmentation'☆19May 21, 2024Updated last year
- Deep 3D Vessel Segmentation based on Cross Transformer Network☆21Aug 10, 2022Updated 3 years ago
- [MICCAI'23] Topology Repairing of Disconnected Pulmonary Airways and Vessels: Baselines and a Dataset☆41Sep 11, 2025Updated 6 months ago
- ☆18Dec 26, 2022Updated 3 years ago
- This repository contains codes for AortaSeg24 Grand-Challenge.☆19Nov 22, 2024Updated last year
- The official code of OCT2Former for Retinal OCT-Angiography vessel segmentation☆16May 8, 2023Updated 2 years ago
- Overview of architecture and implementation of TEDS-Net, as described in MICCAI 2021: "TEDS-Net: Enforcing Diffeomorphisms in Spatial Tra…☆25Jan 4, 2023Updated 3 years ago
- swc to vtk converter for visualization of neuron and neural circuit simulation in ParaView☆12Jan 26, 2018Updated 8 years ago
- Source code for CVPR 19 (Divergence Prior) & 21 (Confluent Vessel Tree) papers.☆31Jul 19, 2021Updated 4 years ago
- ☆14Jul 8, 2023Updated 2 years ago
- Morphological embedding for single neuron with graph neuron networks☆21May 17, 2025Updated 10 months ago
- Joint Topology-preserving and Feature-refinement Network for Curvilinear Structure Segmentation (ICCV21)☆30Feb 7, 2022Updated 4 years ago
- Deep generative models for collagen fiber centerline segmentation and extraction in cancer tissue☆13Feb 5, 2025Updated last year
- 🎲 Parameter estimation for Oceananigans using EnsembleKalmanProcesses☆21Dec 20, 2024Updated last year
- Optic disk annotations for DRIVE and IOSTAR dataset☆10May 14, 2024Updated last year
- NexToU: Efficient Topology-Aware U-Net for Medical Image Segmentation☆81Nov 19, 2025Updated 4 months ago
- Machine learning (and uncertainty quantification?) of climate model parameterizations using differentiable (and probabilistic?) programmi…☆22Feb 16, 2024Updated 2 years ago
- ☆21Feb 5, 2021Updated 5 years ago
- CS-Net (MICCAI 2019) and CS2-Net (MedIA 2020)☆108Aug 13, 2025Updated 7 months ago
- VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.☆22Jan 7, 2026Updated 2 months ago
- 3D vessel-like structure segmentation in pytorch☆32Apr 11, 2023Updated 2 years ago
- An ITK module to compute 3D thickness☆42Nov 12, 2025Updated 4 months ago
- Identity-preserving 3D geometric stylization via surface normal deformation☆39Oct 7, 2025Updated 5 months ago
- ☆272Feb 14, 2024Updated 2 years ago
- IEEE-TMI 2022: code for 'Dual Consistency Enabled Weakly and Semi-Supervised Optic Disc and Cup Segmentation with Dual Adaptive Graph Con…☆13Sep 1, 2022Updated 3 years ago
- Official code for the MICCAI 2024 paper "3D Vessel Graph Generation Using Denoising Diffusion"☆24Jun 26, 2024Updated last year
- pyTorch implementation of clDice☆33Jan 10, 2020Updated 6 years ago
- [IEEE JBHI 2024] Towards Connectivity-Aware Pulmonary Airway Segmentation☆45Nov 13, 2024Updated last year
- Pytorch Implement of EE-Net (IEEE TIP)☆31Oct 26, 2023Updated 2 years ago
- Implementation of "VS: Reconstructing Clothed 3D Human from Single Image via Vertex Shift"☆17Jun 25, 2024Updated last year
- General purpose animations via iterated function systems☆31Jul 29, 2025Updated 7 months ago
- awesome-topology-driven-deep-image-analysis☆50Oct 3, 2025Updated 5 months ago
- Demo code of "EMS-GCN: An End-to-End Mixhop Superpixel-Based Graph Convolutional Network for Hyperspectral Image Classification"☆16Sep 27, 2024Updated last year