DIAGNijmegen / nnUNet-for-pathology
Adapted nnUNet framework with additional features to suit the requirements for pathology applications
☆10Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for nnUNet-for-pathology
- Toolbox for measuring adversarial robustness to many transforms☆19Updated 2 years ago
- ☆36Updated last year
- ☆15Updated 2 years ago
- Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch☆23Updated last year
- CBMIL: Clustering-based Multi-instance Learning Network for Whole Slide Image Classification☆10Updated last year
- ☆35Updated 4 months ago
- [ESWA 2023] Implementation of DSCA: A Dual-stream Network with Cross-attention on Whole-Slide Image Pyramids for Cancer Prognosis☆22Updated 6 months ago
- Multi-Scale Representation Attention based Deep Multiple Instance Learning for Gigapixel Whole Slide Image Analysis☆25Updated last year
- ☆10Updated 2 months ago
- ☆53Updated last month
- Code Repository for AAAI23 paper "Weakly-Supervised Semantic Segmentation for Histopathology Images Based on Dataset Synthesis and Featur…☆12Updated 4 months ago
- ☆55Updated 2 years ago
- ☆49Updated 2 years ago
- MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"☆37Updated 3 years ago
- Variance pooling to incorporate ITH in CPath models - MICCAI 2022☆23Updated 2 years ago
- ☆19Updated 4 months ago
- Repository for "Gigapixel Whole-Slide Images Classification using Locally Supervised Learning"☆27Updated 2 years ago
- ☆23Updated 2 weeks ago
- Code and data for MICCAI 2022 accepted paper: Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Dem…☆17Updated 8 months ago
- The code for Kernel attention transformer (KAT)☆30Updated 5 months ago
- Prototypical multiple instance learning for predicting lymph node metastasis of breast cancer from whole-slide pathological images☆27Updated last year
- Sparse Convolutional Context-Aware Multiple Instance Learning for Whole Slide Image Classification | https://arxiv.org/abs/2105.02726☆26Updated 3 years ago
- DeepMTS: Deep Multi-Task Survival model for joint survival prediction and tumor segmentation☆25Updated 2 months ago
- A Semi-Supervised Multi-Task Learning Framework for Cancer Classification with Weak Annotation in Whole-Slide Images - MedIA 2022☆11Updated 10 months ago
- Pix2Pix-based Stain-to-Stain Translation: A Solution for Robust Stain Normalization in Histopathology Images Analysis☆32Updated 4 years ago
- Pathology image classifier architecture☆12Updated 4 years ago
- ☆24Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- machine-readable information for the TCGA dataset, mirrored from other sources☆14Updated 2 years ago
- Class for getting ROIs and masks from annotated pyramidal images. A work in progress.☆12Updated 3 years ago