DIAGNijmegen / nnUNet-for-pathologyView external linksLinks
Adapted nnUNet framework with additional features to suit the requirements for pathology applications
☆22Jan 16, 2026Updated last month
Alternatives and similar repositories for nnUNet-for-pathology
Users that are interested in nnUNet-for-pathology are comparing it to the libraries listed below
Sorting:
- ☆13Aug 30, 2024Updated last year
- Awesome Domain Generalization for Computational Pathology☆23Nov 7, 2024Updated last year
- [npj Digital Medicine] "Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence m…☆20Dec 18, 2024Updated last year
- ☆17Aug 8, 2022Updated 3 years ago
- Python implementation of the STAPLE segmentation algorithm☆32Jan 22, 2026Updated 3 weeks ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆37Feb 6, 2026Updated last week
- sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…☆44May 8, 2025Updated 9 months ago
- Multi-scale CNNs for histopathology image segmentation☆11Feb 28, 2021Updated 4 years ago
- ☆10Jan 9, 2025Updated last year
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Jan 5, 2024Updated 2 years ago
- A Python package for plotting Kaplan-Meier survival curves☆11Jan 5, 2025Updated last year
- Python code to read/write .annotation files from Halo☆10Feb 19, 2025Updated 11 months ago
- Implementation of various label fusion approaches for medical imaging.☆14May 29, 2025Updated 8 months ago
- ☆13Aug 13, 2025Updated 6 months ago
- [NeurIPS 2025] Few-Shot Learning from Gigapixel Images via Hierarchical Vision-Language Alignment and Modeling☆24Dec 16, 2025Updated 2 months ago
- This is a system prompt to be included in the project instructions for writing long code.☆16Feb 8, 2025Updated last year
- A Plex utility to tag new seasons as they air, perfect for visual organization.☆17Aug 7, 2025Updated 6 months ago
- Unofficial bookdown template for a doctoral thesis at Karolinska Institutet (KI)☆13Dec 6, 2017Updated 8 years ago
- ☆45Jan 19, 2026Updated 3 weeks ago
- CBMIL: Clustering-based Multi-instance Learning Network for Whole Slide Image Classification☆11Mar 5, 2023Updated 2 years ago
- NuHTC: A Hybrid Task Cascade for Nuclei Instance Segmentation and Classification☆19Dec 18, 2025Updated 2 months ago
- ☆11May 19, 2021Updated 4 years ago
- Code Repository for AAAI23 paper "Weakly-Supervised Semantic Segmentation for Histopathology Images Based on Dataset Synthesis and Featur…☆12Jun 23, 2024Updated last year
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder str…☆43Feb 11, 2022Updated 4 years ago
- H&E histopathological staining normalization☆111Jan 24, 2020Updated 6 years ago
- Pytorch implementation for MICCAI2022 - Rethinking Surgical Instrument Segmentation: A Background Image Can Be All You Need☆16Aug 4, 2023Updated 2 years ago
- ECCV-AIMIA 2022 paper: "Multi-Scale Attention-based Multiple Instance Learning for Classification of Multi-Gigapixel Histology Images"☆13Apr 8, 2023Updated 2 years ago
- A public MuSpAn page for community discussions and issue reporting.☆18Jan 22, 2026Updated 3 weeks ago
- Multiresolution Learning-based Hybrid Transformer-CNN Model for Anatomical Landmark Detection☆12Nov 5, 2023Updated 2 years ago
- 🏆1st place in the PANORAMA challenge (early detection of PDAC on contrast-enhanced CT)☆15Jan 13, 2026Updated last month
- Attention Based Multi-Instance Thyroid Cytopathological Diagnosis with Multi-Scale Feature Fusion☆12Jun 22, 2021Updated 4 years ago
- research code collection☆14May 14, 2013Updated 12 years ago
- ☆15Jul 18, 2023Updated 2 years ago
- Official implementation of "ScoreNet: Learning Non-Uniform Attention and Augmentation for Transformer-Based Histopathological Image Class…☆12Mar 6, 2023Updated 2 years ago
- The source code for "Unsupervised Domain Adaptation for Pediatric Brain Tumor Segmentation", ADSMI @ MICCAI, 2024.☆14Jun 14, 2025Updated 8 months ago
- [CVPR 2025] Synthetic-to-Real Self-supervised Robust Depth Estimation via Learning with Motion and Structure Priors☆15Jun 6, 2025Updated 8 months ago
- Open python perfusion tool for CTP and MRP ||| MRI DSC CT toolbox toolkit |||☆45Nov 20, 2025Updated 2 months ago
- ☆56Apr 14, 2025Updated 10 months ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆133Updated this week