Adapted nnUNet framework with additional features to suit the requirements for pathology applications
☆27Mar 16, 2026Updated 6 months ago
Alternatives and similar repositories for nnUNet-for-pathology
Users that are interested in nnUNet-for-pathology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Awesome Domain Generalization for Computational Pathology☆25Nov 7, 2024Updated last year
- A curated and practical guide to foundation models in computational pathology. This repo brings together key architectures, learning tech…☆16Aug 28, 2025Updated last year
- WSI-SAM☆36Oct 3, 2024Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆39Aug 3, 2026Updated last month
- The source code for "Unsupervised Domain Adaptation for Pediatric Brain Tumor Segmentation", ADSMI @ MICCAI, 2024.☆15Jun 14, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structure Preserving Stain Normalization using Unsupervised Multi-domain Adversarial Network with Perception Loss☆17Apr 24, 2022Updated 4 years ago
- Official Pytorch implementation of our paper "Few-Shot Adaptation of Training-Free Foundation Model for 3D Medical Image Segmentation"☆19Sep 5, 2025Updated last year
- ☆13Aug 30, 2024Updated 2 years ago
- ☆76Sep 23, 2024Updated last year
- Training medical image segmentation models with limited labeled data.☆16Jul 17, 2024Updated 2 years ago
- ☆10Jan 9, 2025Updated last year
- ☆39Mar 30, 2026Updated 5 months ago
- ☆16May 24, 2025Updated last year
- Python code to read/write .annotation files from Halo☆10Feb 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Jul 8, 2024Updated 2 years ago
- Pathology image classifier architecture☆13Jan 20, 2020Updated 6 years ago
- Python implementation of the STAPLE segmentation algorithm☆34May 17, 2026Updated 4 months ago
- Implementation of "Dynamic Policy-Driven Adaptive Multi-Instance Learning for Whole Slide Image Classification", (CVPR 2024 Highlight).☆26Mar 6, 2025Updated last year
- ☆17Aug 8, 2022Updated 4 years ago
- Re-implementation of HIPT☆23Jun 5, 2026Updated 3 months ago
- [CVPR 2026] Code for UniPath☆17Feb 26, 2026Updated 6 months ago
- [npj Digital Medicine] "Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence m…☆21Dec 18, 2024Updated last year
- RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]☆60Jan 11, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024☆172Nov 19, 2024Updated last year
- Implementation of various label fusion approaches for medical imaging.☆14May 29, 2025Updated last year
- ☆26Jul 16, 2024Updated 2 years ago
- Awesome List of Digital and Computational Pathology Resources☆133Feb 11, 2026Updated 7 months ago
- This is a nnUNet for semi-supervised☆26Sep 23, 2022Updated 3 years ago
- ☆16Jun 5, 2024Updated 2 years ago
- Dental model seg challenge docker repository build☆20Sep 14, 2022Updated 4 years ago
- Diffusion-based Data Augmentation for Nuclei Image Segmentation (MICCAI 2023)☆23Oct 30, 2023Updated 2 years ago
- ☆20Jul 2, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- ☆23Feb 4, 2020Updated 6 years ago
- 【AAAI 2022】Temporal Action Proposal Generation with Background Constraint☆17May 13, 2022Updated 4 years ago
- [NeurIPS 2025] Few-Shot Learning from Gigapixel Images via Hierarchical Vision-Language Alignment and Modeling☆26Aug 5, 2026Updated last month
- H&E histopathological staining normalization☆112Jan 24, 2020Updated 6 years ago
- ☆35Jul 10, 2022Updated 4 years ago
- [BMVC'23 Oral] Offical repository of "Rethinking Transfer Learning for Medical Image Classification"☆13May 27, 2024Updated 2 years ago