Alternatives and similar repositories for nnUNet-for-pathology

Users that are interested in nnUNet-for-pathology are comparing it to the libraries listed below

• DIAGNijmegen / pathology-hooknet
  ☆64Updated last year
• ChuHan89 / WSSS-Tissue
  ☆64Updated 3 years ago
• YashSharma / C2C
  Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
  ☆62Updated 4 years ago
• TissueImageAnalytics / cerberus
  One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
  ☆94Updated 10 months ago
• pushkarmutha / PySurv
  A Python package for plotting Kaplan-Meier survival curves
  ☆11Updated 9 months ago
• wenqi006 / SlideGraph
  ☆56Updated 3 years ago
• vqdang / H2T
  ☆37Updated 2 years ago
• yfzon / DT-MIL
  ☆37Updated 3 years ago
• aimagelab / mil4wsi
  DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs
  ☆62Updated 10 months ago
• mahmoodlab / Patch-GCN
  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
  ☆154Updated last year
• Xiyue-Wang / RetCCL
  ☆101Updated last year
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆32Updated last year
• uta-smile / DeepAttnMISL
  Contains codes of DeepAttnMISL in MEDIA'20
  ☆59Updated 4 years ago
• MWod / DeeperHistReg
  DeeperHistReg - Source Code
  ☆74Updated last year
• SBU-BMI / quip_cancer_segmentation
  ☆17Updated 3 years ago
• xhangchen / MRAN
  Multi-Scale Representation Attention based Deep Multiple Instance Learning for Gigapixel Whole Slide Image Analysis
  ☆26Updated 2 years ago
• alexjfoote / reetoolbox
  Toolbox for measuring adversarial robustness to many transforms
  ☆19Updated 5 months ago
• zihou98 / PMIL
  Prototypical multiple instance learning for predicting lymph node metastasis of breast cancer from whole-slide pathological images
  ☆31Updated 2 years ago
• PathologyDataScience / BCSS
  Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourc…
  ☆167Updated 3 years ago
• agentdr1 / LA_MIL
  Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch
  ☆24Updated 2 years ago
• histocartography / hact-net
  ☆71Updated 4 years ago
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆57Updated 2 years ago
• martellab-sri / Nuclei-HoverNet
  Hover-net for nuclei instance segmentation and classification
  ☆16Updated 3 years ago
• invoker-LL / WSI-finetuning
  This is the official repository for our CVPR 2023 paper 'Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supe…
  ☆86Updated last year
• MarvinLer / tcga_segmentation
  Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
  ☆140Updated 4 years ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• dazhangyu123 / ACMIL
  Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)
  ☆110Updated 5 months ago
• cwlkr / torchvahadane
  Gpu accelerated vahadane stain normalization for Digital Pathology workflows.
  ☆25Updated last year
• hacylu / FLocK
  Code and GUI for Feature-driven Local Cell Graph (FLocK): New Computational Pathology based descriptors
  ☆16Updated 2 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆69Updated 2 years ago