Tools for creating, analyzing and visualizing Conformation Space Networks
☆18May 26, 2026Updated last month
Alternatives and similar repositories for CSNAnalysis
Users that are interested in CSNAnalysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆34Jul 14, 2026Updated last week
- MMTSB Tool Set☆33Jan 26, 2026Updated 5 months ago
- Features Based Conformational Clustering of MD trajectories. See details at:☆11Nov 20, 2025Updated 8 months ago
- Set of useful HADDOCK utility scripts☆57Sep 19, 2025Updated 10 months ago
- Weighted Ensemble simulation framework in Python☆61Jun 1, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Bayesian inference of conformational populations☆14Jun 11, 2025Updated last year
- Convenience functions for VMD-TCL scripting☆14Apr 3, 2026Updated 3 months ago
- Fast PBC wrapping and unwrapping for VMD☆27Nov 25, 2024Updated last year
- Add CMAP parameters into common AMBER prmtop file☆14Sep 12, 2021Updated 4 years ago
- Modeling molecular ensembles with scalable data structures and parallel computing☆37Mar 11, 2026Updated 4 months ago
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- An open tool implementing some recommended practices for analyzing alchemical free energy calculations☆139May 24, 2024Updated 2 years ago
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- Building and analyzing residue interaction networks with cofactors (includes tutorial).☆19Mar 31, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Jun 26, 2018Updated 8 years ago
- SDSC Summer Institute 2018 Teaching Material☆10Nov 25, 2022Updated 3 years ago
- Force Fields☆71Jan 27, 2025Updated last year
- ☆19Jan 17, 2025Updated last year
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 6 years ago
- ☆22Mar 2, 2026Updated 4 months ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Soft benchmark sets for alchemical free energy calculations, for assessing their accuracy on biomolecular systems☆17Mar 8, 2019Updated 7 years ago
- GraphVAMPnets combines graph neural networks with variational approach for Markovian process (VAMP) theory to identify the slow collectiv…☆13Feb 20, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Data visualizations for biomolecular dynamics☆17Oct 30, 2018Updated 7 years ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆148Jun 28, 2026Updated 3 weeks ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆20Sep 2, 2022Updated 3 years ago
- SketchEl 2 as a cross platform desktop web application☆10Dec 12, 2022Updated 3 years ago
- ☆15Apr 7, 2022Updated 4 years ago
- Python package for solving two-point boundary value problems that wraps BVP_SOLVER☆14Jan 3, 2019Updated 7 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆19Jun 6, 2023Updated 3 years ago
- code for Seattle Twitter-Dev Meetup, October 2016☆13Oct 26, 2016Updated 9 years ago
- A heterogeneous OpenCL implementation of QuickVina2☆17Jan 7, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Example showing how LaTeX can be used to produce a nice-looking curriculum vitae (CV).☆18Jan 11, 2026Updated 6 months ago
- Full-stack performance engineering handbook — Linux kernel & eBPF, profiling/tracing, network & JVM/GPU tuning, storage engines, database…☆19Jun 4, 2026Updated last month
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆27Sep 19, 2025Updated 10 months ago
- Modeling the effects of mutations in proteins using PyRosetta☆27Jan 26, 2018Updated 8 years ago
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆47Sep 29, 2021Updated 4 years ago
- Fuel Cell SImulation Software☆11May 25, 2016Updated 10 years ago
- ☆13Apr 12, 2022Updated 4 years ago