Alternatives and similar repositories for hcuppy:

Users that are interested in hcuppy are comparing it to the libraries listed below

• yubin-park / hccpy
  A Python implementation of Hierarchical Condition Categories
  ☆97Updated 2 months ago
• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆28Updated 7 years ago
• yubin-park / drgpy
  drgpy is a Python library for assigning a combination of diagnosis and procedure codes to Diagnosis Related Groups (MS-DRG) that is used …
  ☆52Updated last year
• fabkury / ndc_map
  Mapping U.S. FDA National Drug Codes (NDC) to Drug Classes and Codes
  ☆97Updated 6 months ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆107Updated last year
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last week
• clinical-ai / omop-etl
  ETL Tool for converting datasets to OMOP CDM
  ☆30Updated 2 years ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆42Updated last month
• OHDSI / Apollo
  [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)
  ☆14Updated 8 months ago
• OHDSI / ETL-CMS
  Workproducts to ETL CMS datasets into OMOP Common Data Model
  ☆100Updated 2 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆64Updated 6 months ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆62Updated 4 months ago
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆131Updated 11 months ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆91Updated 8 months ago
• OHDSI / Perseus
  [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack
  ☆33Updated last year
• OHDSI / ETL-LambdaBuilder
  CDM Builder leveraging AWS Lambda
  ☆16Updated this week
• Melbourne-BMDS / mimic34md2020_materials
  ☆22Updated 2 years ago
• PEDSnet / Data-Quality-Analysis
  The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)
  ☆24Updated 3 years ago
• drivendataorg / snomed-ct-entity-linking
  Winners of the SNOMED CT Entity Linking Challenge
  ☆29Updated 10 months ago
• SoftwareCountry / Perseus
  ☆28Updated last year
• OHDSI / ETL-Synthea
  A package supporting the conversion from Synthea CSV to OMOP CDM
  ☆102Updated 2 months ago
• StefanoTrv / simple_icd_10
  A simple python library for ICD-10 codes
  ☆38Updated 3 weeks ago
• jianlins / PyRuSH
  init
  ☆12Updated 2 months ago
• cqframework / hedis-ig
  HEDIS FHIR-based Quality Reporting
  ☆29Updated 5 years ago
• OHDSI / dbt-synthea
  [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
  ☆23Updated 2 weeks ago
• mark-hoffmann / icd
  Tools for working with icd codes and comorbidities
  ☆28Updated 3 years ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆122Updated 6 months ago
• chvlyl / Comorbidity_Index
  Python package for comorbidity index calculation
  ☆20Updated 7 years ago
• dermatologist / pyomop
  Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!
  ☆42Updated last week
• ClarityNLP / ClarityNLP
  An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
  ☆107Updated 10 months ago