Alternatives and similar repositories for hcuppy

Users that are interested in hcuppy are comparing it to the libraries listed below

• mghassem / medicationCategories
  Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…
  ☆29Updated 7 years ago
• yubin-park / hccpy
  A Python implementation of Hierarchical Condition Categories
  ☆105Updated 7 months ago
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆110Updated 2 years ago
• yubin-park / drgpy
  drgpy is a Python library for assigning a combination of diagnosis and procedure codes to Diagnosis Related Groups (MS-DRG) that is used …
  ☆57Updated last year
• fabkury / ndc_map
  Mapping U.S. FDA National Drug Codes (NDC) to Drug Classes and Codes
  ☆101Updated 11 months ago
• clinical-ai / omop-etl
  ETL Tool for converting datasets to OMOP CDM
  ☆33Updated 2 years ago
• andrewwlong / odsc_workshop
  Clinical NLP workshop for ODSC
  ☆39Updated 5 years ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆80Updated 2 weeks ago
• MLD3 / FIDDLE
  FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…
  ☆95Updated 3 weeks ago
• OHDSI / DataQualityDashboard
  A tool to help improve data quality standards in observational data science.
  ☆164Updated 6 months ago
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆139Updated last year
• mark-hoffmann / icd
  Tools for working with icd codes and comorbidities
  ☆27Updated 4 years ago
• AlgorexHealth / hcc-python
  An implementation of the HCC Risk Adjustment Algorithm in Python
  ☆64Updated 5 years ago
• Melbourne-BMDS / mimic34md2020_materials
  ☆23Updated 2 years ago
• OHDSI / ETL-CMS
  Workproducts to ETL CMS datasets into OMOP Common Data Model
  ☆100Updated 3 years ago
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆131Updated 10 months ago
• dermatologist / pyomop
  Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!
  ☆45Updated 3 weeks ago
• OHDSI / ETL-LambdaBuilder
  CDM Builder leveraging AWS Lambda
  ☆17Updated this week
• ClarityNLP / ClarityNLP
  An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
  ☆107Updated last year
• MLBazaar / Cardea
  An open source automl library for using machine learning in healthcare.
  ☆119Updated last year
• nedap / deidentify
  A Python library to de-identify medical records with state-of-the-art NLP methods.
  ☆139Updated last year
• UMEssen / FHIR-PYrate
  FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…
  ☆68Updated last week
• OHDSI / PatientLevelPrediction
  An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
  ☆199Updated last month
• deepmedicine / Targeted-BEHRT
  Targeted-BEHRT: Deep Learning for Observational Causal Inference on Longitudinal Electronic Health Records
  ☆20Updated 2 years ago
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• tuva-health / FHIR_inferno
  Connector that loads FHIR r4 USCDIv3 JSON data from local file storage into the Tuva common data model in Snowflake.
  ☆27Updated last month
• MIT-LCP / bloatectomy
  A python package for removing duplicate text in clinical notes or other documents
  ☆37Updated 4 years ago
• skparr / ml_loinc_mapping
  ☆17Updated 6 years ago
• kormilitzin / med7
  ☆218Updated 7 months ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆31Updated last year