DEShawResearch / msysLinks
Tools for preparation and analysis of systems for molecular dynamics.
☆25Updated 2 years ago
Alternatives and similar repositories for msys
Users that are interested in msys are comparing it to the libraries listed below
Sorting:
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- ☆44Updated 3 years ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆75Updated this week
- Package for consistent reporting of relative free energy results☆39Updated last month
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Source code and input files associated to the paper "Targeted free energy perturbation revisited: Accurate free energies from mapped refe…☆13Updated 3 years ago
- A machine learned Molecular Mechanics force field with integration into GROMACS and OpenMM☆52Updated 2 months ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆22Updated 8 months ago
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆47Updated 3 years ago
- Given an RDKit molecule that does not sanitise, correct it until it does☆41Updated last year
- Unified Free Energy Dynamics (UFED) simulations with OpenMM☆34Updated last year
- Transferable Double Exponential non-bonded potential for condensed phase simulations of small molecules☆22Updated last year
- A comprehensive toolkit for predicting free energies☆55Updated 7 months ago
- Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).☆27Updated 8 months ago
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated last month
- Standalone charge assignment from Espaloma framework.☆40Updated last year
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- Endstate corrections from MM to QML potential☆13Updated last year
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆28Updated this week
- Repository for Chemical Perception Sampling Tools☆21Updated last year
- OpenMM plugin to interface with XTB☆16Updated 6 months ago
- ☆25Updated 2 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆24Updated 5 years ago
- ☆29Updated last year
- ☆37Updated 11 months ago
- Equivariant GNN for the prediction of atomic multipoles up to quadrupoles.☆30Updated 3 years ago
- Set up relative free energy calculations using a common scaffold☆24Updated 3 months ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆29Updated 11 months ago
- OpenFF NAGL☆17Updated 2 weeks ago