uf-hobi-informatics-lab / ClinicalTransformerMRC
Approaching Clinical NER as a MRC problem
☆11Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for ClinicalTransformerMRC
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆29Updated 6 months ago
- ☆56Updated last year
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆75Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆144Updated last year
- A project for developing transformer-based models for clinical relation extraction☆127Updated last year
- ☆38Updated 2 years ago
- ☆95Updated 2 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆34Updated 9 months ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆157Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆70Updated 3 weeks ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆50Updated 2 years ago
- Code repository for BEEP (Biomedical Evidence Enhanced Predictions) clinical outcome prediction system☆24Updated last year
- SciFive: a text-text transformer model for biomedical literature☆90Updated 5 months ago
- Runtime repository for the SNOMED CT Entity Linking challenge on DrivenData☆14Updated 8 months ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆27Updated 3 years ago
- Basic entity linker for the SNOMED EL Challenge☆13Updated 9 months ago
- auto icd coding with prompt☆47Updated 6 months ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆24Updated last year
- A rule-based Python module for spitting documents into sections.☆12Updated 4 years ago
- Winners of the SNOMED CT Entity Linking Challenge☆25Updated 7 months ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 2 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆58Updated 2 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 4 years ago
- [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records☆74Updated 4 months ago
- ☆21Updated last year
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆56Updated last year
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆72Updated last week
- ☆65Updated 2 years ago
- An information extraction system for free-text eligibility criteria☆36Updated 5 years ago