uf-hobi-informatics-lab / ClinicalTransformerMRCLinks
Approaching Clinical NER as a MRC problem
☆11Updated last year
Alternatives and similar repositories for ClinicalTransformerMRC
Users that are interested in ClinicalTransformerMRC are comparing it to the libraries listed below
Sorting:
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization☆31Updated last year
- A project for developing transformer-based models for clinical relation extraction☆128Updated last year
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- ☆61Updated last year
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- PLM-ICD: Automatic ICD Coding with Pretrained Language Models☆69Updated last year
- ☆38Updated 3 years ago
- The project was to build and release the first publicly available code evidence dataset called MDACE on a subset of the MIMIC-III clinica…☆29Updated last year
- BioELECTRA☆50Updated 3 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆79Updated 2 weeks ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- Self-verification for LLMs.☆64Updated last year
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆190Updated 2 years ago
- PMC-Patients☆96Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- Medical reasoning using large language models☆88Updated last year
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- ☆98Updated 3 years ago
- My heuristic script for sentence tokenization of mimic notes☆8Updated 7 years ago
- Biomedical Entity Linking Benchmark☆13Updated 5 months ago
- SciFive: a text-text transformer model for biomedical literature☆95Updated last year
- auto icd coding with prompt☆49Updated last year
- Findings of EMNLP'22 | Trial2Vec: Zero-Shot Clinical Trial Document Similarity Search using Self-Supervision☆24Updated last year
- Transformers for Clinical NLP☆25Updated 2 weeks ago
- Weak supervision methods for extracting real world evidence from EHRs☆33Updated 5 years ago
- NER and Relation Extraction from Electronic Health Records (EHR).☆88Updated 3 years ago
- BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA☆37Updated last year