SPIDER (System for Processing Image Data from Electron microscopy and Related fields) is an image processing system for electron microscopy, especially usefull for single-particle reconstruction.
☆20Apr 19, 2026Updated 3 months ago
Alternatives and similar repositories for SPIDER
Users that are interested in SPIDER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Control and Automation of Transmission Electron Microscopes☆15Aug 12, 2022Updated 3 years ago
- Python module to read/write SerialEM navigator files.☆12Jan 17, 2023Updated 3 years ago
- TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing☆22Mar 12, 2026Updated 4 months ago
- MATLAB based Simulation of probe formation and imaging in modern field emission SEMs based on electron wave optics☆14Mar 3, 2025Updated last year
- PIP package of cryoCARE☆46Apr 2, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- These are programs that deal with anisotropy (both resolution and sampling)☆23Mar 16, 2018Updated 8 years ago
- Documentations for RELION☆15Mar 13, 2026Updated 4 months ago
- ☆37Jun 22, 2023Updated 3 years ago
- Spectral Imaging and Electron Energy Loss Spectroscopy Analysis☆10Mar 5, 2018Updated 8 years ago
- Converts HDF5 files from EIGER detectors to miniCBF format☆10Dec 14, 2018Updated 7 years ago
- 3D-CTF correction for cryo-electron tomography☆31Nov 8, 2018Updated 7 years ago
- Ice gradient estimation for cryoEM☆11Oct 11, 2024Updated last year
- A Hyperspy extension package for processing and reconstructing electron tomography data☆16Updated this week
- High Throughput Electron Microscopy Image Processing Software☆41Apr 21, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆23Nov 15, 2025Updated 8 months ago
- ☆13Jul 11, 2026Updated last week
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- Public release of Ptolemy package for automated targeting of Cryo-EM grids☆18Mar 9, 2025Updated last year
- STAR file I/O in Python☆56Jun 22, 2026Updated last month
- ☆12Apr 4, 2023Updated 3 years ago
- Python programs for electron microscopy☆141Jan 15, 2026Updated 6 months ago
- This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two…☆13Apr 27, 2020Updated 6 years ago
- Felix: Bloch wave method diffraction pattern simulation software☆18Feb 18, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python program for automated electron diffraction data collection☆62Jun 18, 2026Updated last month
- Cryo-EM micrograph segmentation through deep learning☆23Oct 10, 2025Updated 9 months ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 5 years ago
- Real-time object locator / evaluator for cryo-EM data collection☆12Dec 7, 2024Updated last year
- ☆14Nov 3, 2021Updated 4 years ago
- Protein Purification☆11Dec 7, 2016Updated 9 years ago
- Python library that enables scripting access to CryoSPARC, a cryo-EM software package.☆49Updated this week
- This is the source code for the paper DeepPicker.☆31May 20, 2017Updated 9 years ago
- ☆60May 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A CNN for denoising cryo-EM images☆14Dec 9, 2019Updated 6 years ago
- A simple digital twin for synchrotron micro-CT☆11Apr 21, 2021Updated 5 years ago
- ☆80Jul 15, 2026Updated last week
- NIST DTSA-II - Power tools for X-ray Microanalysis☆20Jul 15, 2026Updated last week
- ☆15Jan 31, 2019Updated 7 years ago
- Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)☆83Apr 26, 2023Updated 3 years ago
- Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography☆61Oct 3, 2025Updated 9 months ago