Alternatives and similar repositories for yamtbx:

Users that are interested in yamtbx are comparing it to the libraries listed below

• osmart / hole2
  Source code for HOLE program.
  ☆35Updated 8 months ago
• tdgrant1 / denss
  Calculate electron density from a solution scattering profile
  ☆33Updated last month
• timothygrant80 / cisTEM
  ☆35Updated 2 months ago
• bio-phys / MDBenchmark
  Quickly generate, start and analyze benchmarks for molecular dynamics simulations.
  ☆78Updated 7 months ago
• arohou / gP2S
  A laboratory information management system (LIMS) for cryoEM
  ☆21Updated 2 years ago
• ExcitedStates / qfit-3.0
  qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.
  ☆40Updated this week
• KULL-Centre / FRETpredict
  Software for the prediction of FRET data from conformational ensembles.
  ☆23Updated 4 months ago
• haddocking / powerfit
  Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
  ☆20Updated last week
• marrink-lab / MDVoxelSegmentation
  A voxel based approach for dynamic cluster analysis of molecular dynamics trajectories.
  ☆26Updated last month
• KULL-Centre / CALVADOS
  ☆57Updated this week
• npschafer / openawsem
  An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM
  ☆36Updated 8 months ago
• uglymol / uglymol
  Macromolecular viewer for crystallographers (WebGL)
  ☆38Updated 11 months ago
• dseeliger / pmx
  Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
  ☆60Updated 4 years ago
• keitaroyam / servalcat
  Structure refinement and validation for crystallography and single particle analysis
  ☆27Updated this week
• ELELAB / LipidDyn
  repository associated to our pipeline for lipid dynamics
  ☆11Updated 10 months ago
• maccallumlab / martini_openmm
  ☆54Updated last year
• openforcefield / smirnoff99Frosst
  A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format
  ☆28Updated 7 months ago
• davidkastner / 3DScience
  MIT 20.S947 course on 3D scientific rendering
  ☆34Updated last year
• insilichem / pychimera
  Use UCSF Chimera Python API in a standard interpreter
  ☆58Updated 6 years ago
• pstansfeld / MemProtMD
  ☆38Updated 2 weeks ago
• nglviewer / mdsrv
  MD trajectory server
  ☆34Updated last year
• jgreener64 / mmterm
  View proteins and trajectories in the terminal
  ☆106Updated 4 years ago
• kassonlab / gmxapi
  (outdated) fork of https://gitlab.com/gromacs/gromacs
  ☆53Updated last year
• depablogroup / LAMMPS-3SPN2
  Coarse-grained molecular model of DNA (LAMMPS plugin)
  ☆17Updated 3 years ago
• shirtsgroup / physical_validation
  Physical validation of molecular simulations
  ☆56Updated last week
• cgmartini / martinize.py
  Create coarse grain Martini input files for Gromacs from (atomistic) pdb files.
  ☆34Updated 2 years ago
• pdynamo / pDynamo3
  The pDynamo molecular modeling and simulation program
  ☆36Updated last month
• channotation / chap
  CHAP is a tool for the functional annotation of ion channel structures:
  ☆21Updated last year
• Psivant / femto
  A comprehensive toolkit for predicting free energies
  ☆52Updated 3 months ago
• hael / SIMPLE
  A new repository (with deleted history) in preparation for release 3.0 of SIMPLE
  ☆24Updated this week