Aho-Corasick automation for large-scale multi-pattern matching. Available for C/C++, Python, and Java on Linux, macOS, and Windows.
☆14Oct 29, 2024Updated last year
Alternatives and similar repositories for actrie
Users that are interested in actrie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 31, 2020Updated 6 years ago
- ☆11Mar 8, 2026Updated last month
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆23Oct 31, 2025Updated 6 months ago
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆79Mar 16, 2026Updated last month
- MHC class II binding prediction☆15Dec 27, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Matlab Evaluation codes for the 2nd CAFA experiment☆14Nov 27, 2023Updated 2 years ago
- BlasterJS - an open source JS library to display Blast results☆21Oct 18, 2019Updated 6 years ago
- [ACL 2023] Code for ContraCLM: Contrastive Learning For Causal Language Model☆35Dec 20, 2023Updated 2 years ago
- The Complete Python Antibody Library☆24Jan 28, 2026Updated 3 months ago
- AbLang: A language model for antibodies☆17Sep 22, 2023Updated 2 years ago
- API logger plugin for Intel Pintool☆14Nov 19, 2017Updated 8 years ago
- RNAseq Data Analysis Course, Cambridge University Bioinformatics Training Facility, September 2019☆16Nov 22, 2019Updated 6 years ago
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 4 years ago
- ☆30Apr 17, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- Fun project to run your own LLM chat bot using llama.cpp☆11Jun 9, 2023Updated 2 years ago
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆33Feb 5, 2026Updated 2 months ago
- A high-performance modification detection tool in Rust☆62Feb 8, 2026Updated 2 months ago
- SPACE: STRING proteins as complementary embeddings☆39Apr 10, 2026Updated 3 weeks ago
- open IPython notebooks for the book of Scientific Computing with Python☆11Jul 16, 2015Updated 10 years ago
- Python3 package for plotting Venn diagrams (up to 4 sets)☆24Sep 2, 2024Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆35Oct 26, 2023Updated 2 years ago
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆24Mar 1, 2023Updated 3 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- ☆15Feb 14, 2024Updated 2 years ago
- Exchange Python-Graph-Objects between networkx, igraph and graph-tools☆12Mar 15, 2024Updated 2 years ago
- Multi-Species Codon Optimization Engine☆28Jul 16, 2025Updated 9 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Sep 26, 2017Updated 8 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Local FAISS vector store as an MCP server – Agent Memory, drop-in local semantic search for Claude / Copilot / Agents.☆29Apr 24, 2026Updated last week
- This repository contains all the solutions of assignments, starter files and other materials related to this specialization.☆10Jan 31, 2021Updated 5 years ago
- Python Implementation of Codon Adaption Index☆37Feb 1, 2023Updated 3 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆32Jun 8, 2022Updated 3 years ago
- Research Skills 安装与使用指南 - 学术研究工作流技能集合(research-proposal + medical-imaging-review + paper-slide-deck)☆59Apr 6, 2026Updated 3 weeks ago
- PLSA for sparse matrices implemented with Numba☆11Oct 18, 2016Updated 9 years ago
- AC-DIAMOND is a DNA-protein alignment tool☆17Oct 11, 2023Updated 2 years ago