Alternatives and similar repositories for WormAnalysis:

Users that are interested in WormAnalysis are comparing it to the libraries listed below

• seung-lab / dijkstra3d
  Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
  ☆79Updated 2 months ago
• Image-Py / sknw
  build net work from skeleton image (2D-3D)
  ☆230Updated 3 years ago
• awangenh / fastaniso
  Fast anisotropic diffusion filter (2D and 3D)
  ☆26Updated 2 years ago
• yzhong52 / ThinVesselSegmentation
  C++ implementation of vesselness measure (or vesselness filter). Both CPU and GPU version are available.
  ☆43Updated 7 years ago
• fepegar / highresnet
  PyTorch implementation of HighRes3DNet
  ☆50Updated last year
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆121Updated 3 months ago
• seung-lab / euclidean-distance-transform-3d
  Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
  ☆248Updated 3 weeks ago
• aAbdz / skeletonize
  2d and 3d distance transform based skeletonization
  ☆22Updated last year
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆146Updated 3 weeks ago
• seung-lab / fill_voids
  Fill holes in binary 2D & 3D images fast.
  ☆17Updated last month
• amy-tabb / tabb-level-set-segmentation
  A 3D level set method, based on a paper for X-Ray CT segmentation of root systems in WACV 2018.
  ☆25Updated 5 years ago
• originlake / DSE-skeleton-pruning
  Python implementation of discrete skeleton evolution
  ☆18Updated last year
• path-openings / RORPO
  Ranking Operator Response of Path Openings
  ☆28Updated last year
• fepegar / SlicerPyTorch
  This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.
  ☆34Updated 11 months ago
• prediction2020 / unet-vessel-segmentation
  ☆34Updated 5 years ago
• pangyuteng / simple-centerline-extraction
  simple-centerline-extraction
  ☆18Updated last year
• phcerdan / SGEXT
  Spatial Graph Extractor. Library and scripts to study graphs extracted from binary images, or to generate graphs and analyze them complet…
  ☆5Updated 2 months ago
• seung-lab / connected-components-3d
  Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …
  ☆407Updated 3 weeks ago
• tueimage / gryds
  A Python package for geometric transformations of images for data augmentation in deep learning
  ☆64Updated 5 years ago
• ELEKTRONN / elektronn3
  A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…
  ☆164Updated last year
• mwagner9 / BEGPUThinning
  ☆30Updated 4 years ago
• InsightSoftwareConsortium / itkwidgets
  An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point …
  ☆595Updated 2 weeks ago
• biomedia-mira / drop2
  drop2 - intensity-based image registration
  ☆37Updated 4 years ago
• 3Scan / 3scan-skeleton
  3D Image Skeletonization Tools
  ☆35Updated last year
• HaipengXiong / weighted-hausdorff-loss
  A loss function (Weighted Hausdorff Distance) for object localization in PyTorch
  ☆90Updated 6 years ago
• mjirik / imcut
  3D graph cut segmentation
  ☆89Updated 3 years ago
• gattia / cycpd
  Cython implementation of Coherent Point Drift (CPD)
  ☆29Updated last year
• mhe / pynrrd
  Simple pure-python module for reading and writing nrrd files.
  ☆120Updated 2 months ago
• KitwareMedical / tensorboard-plugin-3d
  ☆35Updated 2 years ago
• aehrc / Mirorr
  Mirorr: Multimodal Image Registration using blOck-matching and Robust Regression
  ☆28Updated 4 years ago