gabyx / WormAnalysisLinks
Biological Engineering Test Code for Worm Analysis: https://stackoverflow.com/q/37820629/293195
☆40Updated 7 years ago
Alternatives and similar repositories for WormAnalysis
Users that are interested in WormAnalysis are comparing it to the libraries listed below
Sorting:
- build net work from skeleton image (2D-3D)☆241Updated 3 years ago
- Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes☆82Updated 6 months ago
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆423Updated last week
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆253Updated 4 months ago
- 3D graph cut segmentation☆89Updated 3 years ago
- Fast anisotropic diffusion filter (2D and 3D)☆26Updated 2 years ago
- geodesic distance transform of 2d/3d images☆134Updated 2 years ago
- Image segmentation - general superpixel segmentation & center detection & region growing☆380Updated 3 years ago
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆159Updated last week
- C++ implementation of vesselness measure (or vesselness filter). Both CPU and GPU version are available.☆43Updated 7 years ago
- Python implementation of discrete skeleton evolution☆18Updated last year
- An interactive software to extract vessel centerline☆66Updated 4 years ago
- Chan-Vese level-sets in Python☆94Updated 4 years ago
- Matlab implementation of GrabCut and GraphCut for interactive image segmentation☆61Updated 5 years ago
- 2d and 3d distance transform based skeletonization☆22Updated last year
- Fast computation of Hausdorff distance in Python☆256Updated 4 years ago
- Python module to analyse skeleton (thin object) images☆128Updated last month
- Implementation of our MICCAI and invited IJCARS paper on detecting anatomical landmarks of the pelvis in X-ray images from arbitrary view…☆17Updated 5 years ago
- simple-centerline-extraction☆18Updated last month
- A Python package for geometric transformations of images for data augmentation in deep learning☆67Updated 5 years ago
- Image segmenation based on region growing in Python using OpenCV☆42Updated 10 years ago
- Ranking Operator Response of Path Openings☆29Updated last year
- Differentiable elastic deformations for N-dimensional images (Python, SciPy, NumPy, TensorFlow, PyTorch).☆190Updated 5 months ago
- Mirorr: Multimodal Image Registration using blOck-matching and Robust Regression☆29Updated 4 years ago
- Build U-Nets for segmentation from pre-trained TorchVision models.☆90Updated 6 years ago
- OpenCentroidNet☆13Updated 8 months ago
- The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core librarie…☆197Updated 4 months ago
- A software for fast segmentation and centerline extraction of tubular structures (e.g. blood vessels and airways) from different modaliti…☆94Updated 10 years ago
- MATLAB code to calculate the 3D skeleton of a binary volume using parallel medial axis thinning☆47Updated 5 years ago
- Cython implementation of Coherent Point Drift (CPD)☆34Updated last year