epimath / param-estimation-SIRLinks
Example R, Python, and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.
☆34Updated 6 years ago
Alternatives and similar repositories for param-estimation-SIR
Users that are interested in param-estimation-SIR are comparing it to the libraries listed below
Sorting:
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆41Updated 5 years ago
- Extended state-space SIR epidemiological models☆75Updated 4 years ago
- Simulators for Compartmental Models in Epidemiology☆40Updated 5 years ago
- ☆146Updated 5 years ago
- ☆66Updated 3 years ago
- Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools☆56Updated 5 years ago
- Modelling of the nCoV-2019 outbreak in Wuhan, China, by Jon Read, Jess Bridgen, and Chris Jewell at Lancaster University.☆73Updated 5 years ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 5 years ago
- Extensive and accessible COVID-19 data + forecasting for counties and hospitals. 📈☆230Updated 2 years ago
- small template code to create a multilayer network using matplotlib and networkx☆117Updated 3 years ago
- ☆40Updated 6 years ago
- Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.☆25Updated 3 months ago
- SEIR model for COVID-19 infection, including different clinical trajectories of infection☆195Updated 5 years ago
- Quantifying structural dissimilarities in networks☆45Updated 2 years ago
- Attempt to find correlation between a region's demographic/economic factors with its ability to manage disease spread☆146Updated 5 years ago
- CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.☆111Updated this week
- A Bayesian model+algorithm for community detection in bipartite networks☆59Updated 5 years ago
- Epidemiology analysis package☆150Updated 2 years ago
- Py3plex - A multilayer complex network visualization and analysis library in python3☆175Updated this week
- Tools for causal discovery in R☆20Updated 9 months ago
- Generalized SEIR Epidemic Model (fitting and computation)☆91Updated last year
- R Wrapper for Tetrad Library☆35Updated last year
- Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 …☆164Updated 4 months ago
- This page is a companion for our paper on optimal link prediction, written by Amir Ghasemian, Homa Hosseinmardi, Aram Galstyan, Edoardo M…☆66Updated last year
- Guidelines and forecasts for a collaborative U.S. influenza forecasting project.☆39Updated 5 years ago
- Mathematical Modeling of Infectious Disease Dynamics☆261Updated 3 weeks ago
- ☆74Updated 5 years ago
- CJOBS☆14Updated 6 years ago
- Deep Learning for Epidemiological Predictions☆14Updated 5 years ago
- Probabilistic generative model that incorporates both the topology of interactions and node attributes to extract overlapping communities…☆45Updated 2 years ago