epimath / param-estimation-SIR
Example R, Python, and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.
β32Updated 6 years ago
Alternatives and similar repositories for param-estimation-SIR:
Users that are interested in param-estimation-SIR are comparing it to the libraries listed below
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, Chinaβ40Updated 4 years ago
- Extensive and accessible COVID-19 data + forecasting for counties and hospitals. πβ228Updated last year
- Compartmental SEIQRD model to model the effects of government policies on SARS-CoV-2 spread in Belgium. Macro-economic Input-Output modelβ¦β23Updated last month
- Extended state-space SIR epidemiological modelsβ75Updated 3 years ago
- Modelling of the nCoV-2019 outbreak in Wuhan, China, by Jon Read, Jess Bridgen, and Chris Jewell at Lancaster University.β73Updated 4 years ago
- Data and code for COVID-19 NPI effectiveness estimation.β30Updated 3 years ago
- Simulators for Compartmental Models in Epidemiologyβ39Updated 4 years ago
- β66Updated 2 years ago
- Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.β25Updated 7 months ago
- Generalized SEIR Epidemic Model (fitting and computation)β88Updated 10 months ago
- β35Updated 5 years ago
- Code associated to the paper 'Simplicial models of social contagion' Nat. Commun. (2019)β43Updated 3 years ago
- Bayesian Markov Chain Monte Carlo Forecast for COVID-19β41Updated 4 years ago
- A Bayesian model+algorithm for community detection in bipartite networksβ57Updated 4 years ago
- Updates to the synthetic contact matricesβ36Updated last year
- Probabilistic generative model that incorporates both the topology of interactions and node attributes to extract overlapping communitiesβ¦β42Updated last year
- Fast code for SIR on temporal networksβ25Updated 3 years ago
- Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data toolsβ57Updated 4 years ago
- Analysis code and data for COVID-19 age-specific clinical fractionβ22Updated 4 years ago
- An adjustive SEIR model to estimate parameters of 2019-nCoVβ19Updated 2 years ago
- β148Updated 4 years ago
- COVID-19 infectious forecasting using SEIR model and R0 estimationβ65Updated 3 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parametersβ33Updated 2 years ago
- This repo aims to share the core algorithms used in the paper, "Global labor flow network reveals the hierarchical organization and dynamβ¦β29Updated 5 years ago
- A meta-population model for COVID19 in Chinaβ12Updated 4 years ago
- Forecasting hospitalization and ICU rates of the COVID-19 outbreak: an efficient SEIR modelβ13Updated 4 years ago
- β31Updated 4 years ago
- small template code to create a multilayer network using matplotlib and networkxβ113Updated 2 years ago
- This is the raw data repository (policy record format) of the CoronaNet project on government responses to the COVID-19 pandemic.β98Updated last year
- β12Updated last year