epimath / param-estimation-SIR
Example R, Python, and Matlab code for ML estimation with an SIR model, as well as for examining identifiability and uncertainty using the Fisher information matrix and profile likelihoods.
☆32Updated 6 years ago
Alternatives and similar repositories for param-estimation-SIR:
Users that are interested in param-estimation-SIR are comparing it to the libraries listed below
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆40Updated 4 years ago
- Extended state-space SIR epidemiological models☆75Updated 3 years ago
- Compartmental SEIQRD model to model the effects of government policies on SARS-CoV-2 spread in Belgium. Macro-economic Input-Output model…☆23Updated 2 months ago
- Extensive and accessible COVID-19 data + forecasting for counties and hospitals. 📈☆228Updated last year
- Simulators for Compartmental Models in Epidemiology☆39Updated 4 years ago
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 3 years ago
- Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools☆57Updated 5 years ago
- SEIR model for COVID-19 infection, including different clinical trajectories of infection☆195Updated 4 years ago
- Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022☆74Updated 4 months ago
- Modelling of the nCoV-2019 outbreak in Wuhan, China, by Jon Read, Jess Bridgen, and Chris Jewell at Lancaster University.☆73Updated 4 years ago
- ☆14Updated 4 years ago
- ☆53Updated last year
- Epidemic Modeling for Everyone☆282Updated 9 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Generalized SEIR Epidemic Model (fitting and computation)☆88Updated 11 months ago
- Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China☆21Updated 2 years ago
- Mathematical Modeling of Infectious Disease Dynamics☆250Updated 2 months ago
- Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.☆25Updated 9 months ago
- ☆12Updated last year
- Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling s…☆71Updated 2 years ago
- Bayesian Markov Chain Monte Carlo Forecast for COVID-19☆41Updated 4 years ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆22Updated 4 years ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- COVID-19 Scenario Modeling Hub☆67Updated 2 months ago
- ☆66Updated 3 years ago
- ☆148Updated 4 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆95Updated 7 months ago
- Updates to the synthetic contact matrices☆36Updated last year
- Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3☆166Updated 2 years ago
- Forecasting the spread of the novel coronavirus☆10Updated last year