Coarse-grained mapping and parametrisation for the Martini 3 forcefield
☆23Jul 20, 2026Updated last month
Alternatives and similar repositories for cg_param_m3
Users that are interested in cg_param_m3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatic MARTINI parametrization of small organic molecules☆76May 28, 2025Updated last year
- INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems☆94Apr 19, 2026Updated 4 months ago
- Martini 3 Building Blocks for Lipid Nanoparticle Design☆27Mar 18, 2026Updated 5 months ago
- Build coarse-grained mapping for molecules from a web-GUI☆19Sep 10, 2021Updated 4 years ago
- Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates☆197Aug 17, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Home of the public Martini 3 lipid parameters☆29Sep 29, 2025Updated 11 months ago
- A dissipative particle dynamics (DPD) project.☆13Aug 16, 2023Updated 3 years ago
- Martini 3 small molecule database☆73May 13, 2026Updated 3 months ago
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆26May 12, 2021Updated 5 years ago
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆13Jun 17, 2022Updated 4 years ago
- Collection of interaction and molecule parameters for the Martini3 force-field☆23Feb 7, 2023Updated 3 years ago
- Supernova's MM-PBSA binding free energy calculation tool.☆13Jul 13, 2026Updated last month
- Mapping from Coarse Grain Models to Atomistic (and Back)☆22Sep 27, 2023Updated 2 years ago
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆31Jan 21, 2026Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Physics Informed Neural Networks (PINNs) code to solve the 3D Poisson-Boltzmann equation.☆17Mar 31, 2025Updated last year
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆49Aug 19, 2024Updated 2 years ago
- Python program for modelling and simulating polymers.☆44Jul 6, 2026Updated last month
- Home of the Martini 3 Sterol Parameters☆13Oct 10, 2023Updated 2 years ago
- Automatic Martini force field generator for small organic molecules (up to 25 heavy atoms), Martini 3 compatible☆40Jul 17, 2026Updated last month
- Discontinuous Molecular Dynamics (DMD) Simulation Package☆16Jun 8, 2026Updated 2 months ago
- A molecular dynamics tutorial for new researchers in the area of nanomechanics.☆16Sep 2, 2022Updated 3 years ago
- Coarse grain to atomistic molecular coordinate and topology converter☆16Mar 13, 2025Updated last year
- Code for enumerating and evaluating numerical methods for Langevin dynamics using near-equilibrium estimates of the KL-divergence. Accomp…☆13Mar 28, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Data files for the molecular modelling course☆14Jan 26, 2024Updated 2 years ago
- A python module to plot secondary structure schemes☆26Mar 18, 2026Updated 5 months ago
- ☆49Feb 17, 2026Updated 6 months ago
- Builder for molecular systems☆17Feb 3, 2026Updated 6 months ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆69Aug 2, 2026Updated 3 weeks ago
- repository associated to our pipeline for lipid dynamics☆15Jun 17, 2024Updated 2 years ago
- Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations☆16Aug 12, 2026Updated 2 weeks ago
- Tools for polymer molecular dynamics simulations☆17Updated this week
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Dec 10, 2025Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Gromacs topology template generator☆16Jul 15, 2021Updated 5 years ago
- A force field for the simulation of inorganic-organic interfaces (INTERFACE-CHARMM, INTERFACE-PCFF)☆24Feb 14, 2024Updated 2 years ago
- ☆32Feb 24, 2022Updated 4 years ago
- automate the setup of atomistic clay models for classical molecular dynamics simulations with GROMACS☆20Oct 14, 2025Updated 10 months ago
- Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics.☆23Updated this week
- Describe and apply transformation on molecular structures and topologies☆150Jul 28, 2026Updated last month
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆28Jun 8, 2024Updated 2 years ago