bwbrunton / dmd-neuroLinks
code to compute the Dynamic Mode Decomposition (DMD), adapted for large-scale neural recordings
☆28Updated 9 years ago
Alternatives and similar repositories for dmd-neuro
Users that are interested in dmd-neuro are comparing it to the libraries listed below
Sorting:
- code for Cunningham and Ghahramani (2015), Journal of Machine Learning Research☆27Updated 8 years ago
- A TensorFlow 2.0 implementation of Latent Factor Analysis via Dynamical Systems (LFADS) and AutoLFADS.☆21Updated last year
- This code package is for the Tensor-Maximum-Entropy (TME) method. This method generates random surrogate data that preserves a specified …☆18Updated 7 years ago
- Estimation, analysis and decomposition of brainwave spatiotemporal dynamics☆28Updated 3 years ago
- SpikeForest -- spike sorting analysis for website☆16Updated 4 years ago
- Code for fitting neural spike trains with nonparametric hidden Markov and semi-Markov models built upon mattjj's PyHSMM framework.☆14Updated 6 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆39Updated 2 months ago
- Spike sorting software being developed at Flatiron Institute, based on JRCLUST (Janelia Rocket Cluster)☆28Updated 2 years ago
- Pytorch implementation of LFADS for demo at CAN workshop☆19Updated 5 years ago
- This repository contains the main scripts for local linear segmentation and subsequent analysis of the resulting model space☆15Updated 4 years ago
- Neural Spike Train Analysis Toolbox for Matlab☆34Updated 7 years ago
- ☆11Updated 7 years ago
- ☆20Updated last year
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆35Updated last year
- a Python package for unbiased estimation of timescales and hypothesis testing☆26Updated last month
- A quickstart guide to tensor decomposition☆71Updated 3 years ago
- ☆23Updated last year
- Train excitatory-inhibitory recurrent neural networks for cognitive tasks.☆50Updated 9 years ago
- Tikhonov regression in python☆32Updated last year
- ARfit: Multivariate Autoregressive Model Fitting☆28Updated 7 years ago
- Extracting neuronal functional network dynamics via adaptive Granger causality analysis☆18Updated 7 years ago
- Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning☆14Updated 3 years ago
- Recurrent state-space models for decision making☆30Updated 2 years ago
- Python package for power mapping and functional connectivity using DICS☆36Updated 3 months ago
- Partial Entropy Decomposition and Partial Information Decomposition with pointwise surprisal measures☆45Updated last year
- Pythonic implementation of the Phase Transfer Entropy method using NumPy and SciPy☆24Updated 7 months ago
- Dimensionality reduction of spikes trains☆49Updated 3 years ago
- Recordings of 10k neurons during spontaneous behaviors☆52Updated last year
- Code for "Inferring Latent Dynamics Underlying Neural Population Activity via Neural Differential Equations"☆10Updated 3 years ago
- Functions for calculating mutual information and other information theoretic quantities using a parametric Gaussian copula.☆89Updated 4 years ago