bwbrunton / dmd-neuroLinks
code to compute the Dynamic Mode Decomposition (DMD), adapted for large-scale neural recordings
☆27Updated 9 years ago
Alternatives and similar repositories for dmd-neuro
Users that are interested in dmd-neuro are comparing it to the libraries listed below
Sorting:
- Code for fitting neural spike trains with nonparametric hidden Markov and semi-Markov models built upon mattjj's PyHSMM framework.☆15Updated 7 years ago
- code for Cunningham and Ghahramani (2015), Journal of Machine Learning Research☆28Updated 9 years ago
- This code package is for the Tensor-Maximum-Entropy (TME) method. This method generates random surrogate data that preserves a specified …☆18Updated 8 years ago
- A quickstart guide to tensor decomposition☆72Updated 3 years ago
- ☆24Updated 2 years ago
- Analytical methods for efficient inference of integrate-and-fire circuit models from single-trial spike trains☆10Updated 6 years ago
- ☆11Updated 8 years ago
- Code for "Inferring Latent Dynamics Underlying Neural Population Activity via Neural Differential Equations"☆13Updated 4 years ago
- C++ library for simulation of multiscale neural field dynamics☆35Updated 6 years ago
- Pytorch implementation of LFADS for demo at CAN workshop☆19Updated 6 years ago
- Dimensionality reduction of spikes trains☆49Updated 4 years ago
- The framework for inferring Langevin dynamics from spike data☆47Updated 6 months ago
- This repository contains the main scripts for local linear segmentation and subsequent analysis of the resulting model space☆15Updated 5 years ago
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆19Updated 8 years ago
- Gaussian Process Factor Analysis☆32Updated 10 years ago
- Train excitatory-inhibitory recurrent neural networks for cognitive tasks.☆54Updated 9 years ago
- This repository contains code for (1) generating example neural responses from an Izhikevich model, and (2) fitting a GLM to neural respo…☆13Updated 2 years ago
- Demixed Shared Component Analysis☆13Updated 5 years ago
- Tikhonov regression in python☆32Updated 2 years ago
- CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations☆19Updated 4 years ago
- Neyman-Scott point process model to identify sequential firing patterns in high-dimensional spike trains☆70Updated 2 years ago
- Preconditioned ICA for Real Data☆115Updated this week
- An Introduction to Modeling Neuronal Dynamics - Borgers in python, Single Neuron Models, Mathematical Modeling, Computational Neuroscienc…☆47Updated 10 months ago
- SpikeForest -- spike sorting analysis for website☆16Updated 5 years ago
- Functions for calculating mutual information and other information theoretic quantities using a parametric Gaussian copula.☆99Updated 5 years ago
- Exercises and examples for the latent dynamics workshop☆19Updated 4 months ago
- DynaSim toolbox for modeling and simulating dynamical systems☆61Updated 10 months ago
- Spike sorting software being developed at Flatiron Institute, based on JRCLUST (Janelia Rocket Cluster)☆29Updated 3 years ago
- Topological data analysis tools for cross correlation matrices☆38Updated 2 years ago
- 🕝 Time-warped principal components analysis (twPCA)☆127Updated 4 years ago