Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
☆35Oct 6, 2025Updated last year
Alternatives and similar repositories for epipack
Users that are interested in epipack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gilles…☆106May 22, 2020Updated 6 years ago
- (1) Input a network. (2) Style it. (3) Download the result.☆28Feb 13, 2020Updated 6 years ago
- Networkx implementation of the SIS epidemic model for large and heterogeneous networks☆18Aug 12, 2023Updated 3 years ago
- ☆11Apr 24, 2023Updated 3 years ago
- Python package for filtering data on unstructured meshes☆13Sep 23, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- [DEPRECATED] Imitate an API for downloading data from Facebook Data For Good☆12Jun 3, 2021Updated 5 years ago
- An efficient implementation of a set which can be randomly sampled according to the weights of the elements.☆24May 13, 2024Updated 2 years ago
- Quality control for phylogenetic analyses☆13Oct 19, 2026Updated 2 weeks ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Updated this week
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated last month
- PhyDyn: Epidemiological modelling in BEAST☆21Sep 7, 2026Updated last month
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆64Oct 22, 2026Updated last week
- ☆11Dec 18, 2020Updated 5 years ago
- C++ implementation of a MCMC sampler for the (canonical) SBM☆11Oct 21, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆18Jun 11, 2024Updated 2 years ago
- A Python library/CLI for collecting and archiving posts from the Bluesky social network using the Jetstream API.☆11Feb 3, 2025Updated last year
- A curated list of awesome resources for COVID-19☆37Jun 15, 2020Updated 6 years ago
- pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order…☆145May 2, 2020Updated 6 years ago
- The companion repository to Computational Modeling of Infectious Disease by Chris von Csefalvay☆12Sep 4, 2026Updated last month
- Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.☆47Aug 28, 2025Updated last year
- The repository for the back end component of the NUM-App☆11Jul 30, 2026Updated 3 months ago
- Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 …☆165Sep 9, 2026Updated last month
- Scripts for benchmarking performance of Zarr and HDF5 in different contexts☆11Feb 21, 2019Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- MATLAB and Python + d3js. Webweb is a tool for creating interactive visualizations of networks on the web.☆84Sep 20, 2022Updated 4 years ago
- ☆10May 23, 2019Updated 7 years ago
- Evaluating Nanopore-based bacterial variant calling☆23Oct 7, 2026Updated 3 weeks ago
- feyngen and feyncop - Two programs for calculations with Feynman graphs☆21Jan 28, 2025Updated last year
- Easily render minimal maps for posters using R and ggplot.☆12Mar 9, 2021Updated 5 years ago
- Real time and remote MCMC trace monitoring with BEASTIARY.☆20Oct 13, 2026Updated 3 weeks ago
- Two-point correlation code using k-d tree method. Active developing; many more functions to be added.☆14May 29, 2015Updated 11 years ago
- A linguistics-focussed command line tool for generating BEAST XML files.☆21Nov 8, 2021Updated 4 years ago
- Phylodynamic inference☆23May 15, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Inference and modeling for partially observed Markov process (POMP) models☆24Updated this week
- The most extensive public dataset of historical painters on the internet. Created from combining WikiArt and Art500k painting data, enric…☆16Nov 7, 2025Updated 11 months ago
- A package to download several URL as one, as well as supporting multi-part URLs.☆10Oct 27, 2026Updated last week
- Der German Index of Socioeconomic Deprivation (GISD) ist ein am Robert Koch-Institut entwickelter Index zur Erfassung regionaler sozioöko…☆16Sep 29, 2026Updated last month
- Code for the paper "Higher-order motif analysis in hypergraphs"☆36Apr 5, 2022Updated 4 years ago
- Python package for detecting stops in trajectory data☆67Updated this week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year