benmaier / epipackLinks
Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
☆33Updated 4 months ago
Alternatives and similar repositories for epipack
Users that are interested in epipack are comparing it to the libraries listed below
Sorting:
- A matplotlib-based library to produce sankey plots☆35Updated 2 years ago
- epydemix, the ABC of epidemics☆57Updated this week
- Inferring high-resolution human mixing patterns for disease modeling☆48Updated 3 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆49Updated 11 months ago
- A library for network {reconstruction, distances, dynamics}☆171Updated 2 years ago
- MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture…☆14Updated last year
- Noisy network measurement with stan☆56Updated 3 weeks ago
- Flow stability framework for dynamic community detection in temporal networks☆32Updated 6 months ago
- Concise, readable summaries of network data☆22Updated 2 years ago
- Function to produce Bezier curves for the edges in a NetworkX graph☆63Updated 6 years ago
- Paxplot is a Python visualization library for parallel axis, or parallel coordinate, plots.☆10Updated 4 months ago
- distributed, likelihood-free inference☆216Updated last month
- create sankey diagrams with matplotlib☆278Updated 2 years ago
- Python implementation of Force-Directed Edge Bundling for Graph Visualization☆20Updated last year
- Gillespie algorithm for the simulation of spreading processes on complex networks using a composition and rejection scheme.☆11Updated 4 years ago
- Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 …☆164Updated 6 months ago
- Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers☆23Updated 5 years ago
- small template code to create a multilayer network using matplotlib and networkx☆117Updated 3 years ago
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 4 years ago
- ☆636Updated last month
- Power Law Distribution Fitting in python (and fortran and cython)☆90Updated 5 years ago
- A central repository to coordinate code reviews between researchers at the University of Oxford☆104Updated 5 years ago
- Wes Anderson color palettes for python!☆31Updated 8 months ago
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆126Updated 4 months ago
- arched links in networkx drawing☆12Updated 6 years ago
- An extended package for clustering similarity☆72Updated 3 months ago
- Python package of EDM tools☆142Updated 2 months ago
- An efficient implementation of a set which can be randomly sampled according to the weights of the elements.☆24Updated last year
- COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions☆283Updated 7 months ago
- PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross☆168Updated last year