Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
☆35Oct 6, 2025Updated 10 months ago
Alternatives and similar repositories for epipack
Users that are interested in epipack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- (1) Input a network. (2) Style it. (3) Download the result.☆28Feb 13, 2020Updated 6 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Aug 9, 2026Updated 3 weeks ago
- Networkx implementation of the SIS epidemic model for large and heterogeneous networks☆18Aug 12, 2023Updated 3 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆46Aug 27, 2026Updated last week
- Interactive visualization of networks based on Ulf Aslak's d3 web app.☆301Jan 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- [DEPRECATED] Imitate an API for downloading data from Facebook Data For Good☆12Jun 3, 2021Updated 5 years ago
- An efficient implementation of a set which can be randomly sampled according to the weights of the elements.☆24May 13, 2024Updated 2 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 8 months ago
- Quality control for phylogenetic analyses☆13Updated this week
- PhyDyn: Epidemiological modelling in BEAST☆21Updated this week
- ☆18Jun 11, 2024Updated 2 years ago
- Void Analysis Software Toolkit☆13Jul 20, 2026Updated last month
- Basic watch face for Garmin watch☆10Feb 23, 2018Updated 8 years ago
- Plotting Lorenz curves with the blessing of ggplot2☆31Jul 13, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- C++ implementation of a MCMC sampler for the (canonical) SBM☆11Oct 21, 2019Updated 6 years ago
- MATLAB and Python + d3js. Webweb is a tool for creating interactive visualizations of networks on the web.☆84Sep 20, 2022Updated 3 years ago
- Scripts for benchmarking performance of Zarr and HDF5 in different contexts☆11Feb 21, 2019Updated 7 years ago
- Two-point correlation code using k-d tree method. Active developing; many more functions to be added.☆14May 29, 2015Updated 11 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆49Jun 4, 2026Updated 3 months ago
- A jekyll template derived from Minimal Mistakes and inspired by academicpages. To see an example of what a webpage might look like with t…☆15May 22, 2018Updated 8 years ago
- Starsim disease modeling framework☆44Updated this week
- Inference and modeling for partially observed Markov process (POMP) models☆21Updated this week
- Code for "Reconstruction of plant--pollinator networks from observational data"☆20Apr 21, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Remove unwanted LaTeX commands and their associated closing brackets☆11Jul 22, 2024Updated 2 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆11Mar 29, 2023Updated 3 years ago
- Phylodynamic inference☆23May 15, 2020Updated 6 years ago
- Small utility for retrieving data from figures☆10Jul 5, 2022Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- ODE modelling in Python☆31Aug 21, 2026Updated 2 weeks ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- A Github action for Matlab or Octave unit tests☆14Feb 22, 2023Updated 3 years ago
- Python code to analyze data and predict Covid-19 infection☆11Feb 21, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12May 31, 2016Updated 10 years ago
- Fit the algebraic growth of case numbers in Mainland China with an SIR-containment model☆22Jul 6, 2023Updated 3 years ago
- python library and tools for pre and post processing of the FESOM ocean model files☆12Apr 19, 2023Updated 3 years ago
- Covid-19 spread simulator with human mobility and intervention modeling.☆19Aug 22, 2026Updated last week
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Dec 27, 2023Updated 2 years ago
- Provides classes for Adjacency Matrix Sequences and Temporal Network Edgelists.☆20Sep 27, 2024Updated last year