benmaier / epipackLinks
Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
☆33Updated last month
Alternatives and similar repositories for epipack
Users that are interested in epipack are comparing it to the libraries listed below
Sorting:
- epydemix, the ABC of epidemics☆44Updated last week
- A matplotlib-based library to produce sankey plots☆35Updated 2 years ago
- Function to produce Bezier curves for the edges in a NetworkX graph☆62Updated 6 years ago
- Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers☆23Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆47Updated 2 years ago
- Power Law Distribution Fitting in python (and fortran and cython)☆89Updated 5 years ago
- arched links in networkx drawing☆12Updated 6 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆48Updated 8 months ago
- Gillespie algorithm for the simulation of spreading processes on complex networks using a composition and rejection scheme.☆11Updated 4 years ago
- Python implementation of Force-Directed Edge Bundling for Graph Visualization☆20Updated last year
- Paxplot is a Python visualization library for parallel axis, or parallel coordinate, plots.☆10Updated last month
- Python package of EDM tools☆138Updated 3 weeks ago
- create sankey diagrams with matplotlib☆275Updated last year
- Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 …☆164Updated 3 months ago
- An efficient implementation of a set which can be randomly sampled according to the weights of the elements.☆24Updated last year
- hacky way to bundle some edges in networkx and matplotlib☆20Updated 5 years ago
- resilience and prospective resilience of complex networks☆21Updated 4 years ago
- small template code to create a multilayer network using matplotlib and networkx☆117Updated 3 years ago
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 4 years ago
- Visualization Package for NetworkX☆473Updated 8 months ago
- Noisy network measurement with stan☆56Updated 4 years ago
- ☆628Updated last month
- Joyplots in Python with matplotlib & pandas☆602Updated last year
- MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture…☆14Updated last year
- COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions☆274Updated 4 months ago
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆123Updated last month
- Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gilles…☆105Updated 5 years ago
- PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross☆168Updated last year
- boilerplate for reproducible and transparent science☆196Updated 7 months ago
- distributed, likelihood-free inference☆217Updated 4 months ago