benmaier / epipackLinks
Fast prototyping of infectious-disease models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
☆33Updated 2 months ago
Alternatives and similar repositories for epipack
Users that are interested in epipack are comparing it to the libraries listed below
Sorting:
- A matplotlib-based library to produce sankey plots☆35Updated 2 years ago
- Paxplot is a Python visualization library for parallel axis, or parallel coordinate, plots.☆10Updated 2 months ago
- Python package of EDM tools☆140Updated 3 weeks ago
- A library for network {reconstruction, distances, dynamics}☆171Updated 2 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆49Updated 9 months ago
- epydemix, the ABC of epidemics☆52Updated last week
- COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions☆276Updated 5 months ago
- Accepted JOSS papers☆299Updated this week
- Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 …☆164Updated 4 months ago
- Iterative Proportional Fitting for Python with N dimensions☆104Updated last year
- Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers☆23Updated 4 years ago
- small template code to create a multilayer network using matplotlib and networkx☆117Updated 3 years ago
- MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture…☆14Updated last year
- An efficient implementation of a set which can be randomly sampled according to the weights of the elements.☆24Updated last year
- Python implementation of Force-Directed Edge Bundling for Graph Visualization☆20Updated last year
- distributed, likelihood-free inference☆217Updated last week
- Gillespie algorithm for the simulation of spreading processes on complex networks using a composition and rejection scheme.☆11Updated 4 years ago
- Function to produce Bezier curves for the edges in a NetworkX graph☆63Updated 6 years ago
- create sankey diagrams with matplotlib☆275Updated last year
- arched links in networkx drawing☆12Updated 6 years ago
- Tool for exploring probability distributions.☆24Updated 11 months ago
- A python library and command-line client for file storage on OSF☆140Updated 2 years ago
- Randomization-based inference in Python☆84Updated this week
- An extended package for clustering similarity☆71Updated last month
- Concise, readable summaries of network data☆22Updated 2 years ago
- ☆80Updated 7 years ago
- ☆630Updated 2 months ago
- Power Law Distribution Fitting in python (and fortran and cython)☆89Updated 5 years ago
- Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gilles…☆105Updated 5 years ago
- PyRoss: inference, forecasts, and optimised control of epidemiological models in Python. github.com/rajeshrinet/pyross☆168Updated last year