SemaphoreSolutions / s4-clarity-libLinks
A modern Python library for BaseSpace Clarity LIMS.
☆16Updated 2 months ago
Alternatives and similar repositories for s4-clarity-lib
Users that are interested in s4-clarity-lib are comparing it to the libraries listed below
Sorting:
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- ☆92Updated last week
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 10 months ago
- Parse Illumina sample sheets with Python☆50Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Project metadata manager for PEPs in Python☆37Updated this week
- Consensus assembly and variant calling workflow.☆12Updated 10 years ago
- ☆38Updated 8 months ago
- WDL tools for parsing, type-checking, and more☆27Updated last month
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated last month
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆25Updated 2 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Updated last year
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- Convert CWL to WDL☆17Updated 9 years ago
- A repository for the schemas used for the Data Repository Service.☆63Updated 2 months ago
- A python script used to annotate genomic intervals.☆18Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 10 months ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 7 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆39Updated 4 years ago