PublicHealthDynamicsLab / FRED
The Public FRED Repository
☆73Updated 4 months ago
Related projects: ⓘ
- Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling s…☆68Updated last year
- ☆31Updated 4 years ago
- Source files for building the IDM EMOD disease transmission model.☆92Updated 3 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- ☆53Updated 8 months ago
- Data and code for COVID-19 NPI effectiveness estimation.☆30Updated 3 years ago
- Python tools for epidemiology☆134Updated last year
- R package for statistical inference using partially observed Markov processes☆112Updated last week
- A fast C++ API for simulating the spread of epidemics on contact networks.☆41Updated 10 months ago
- Implementation of https://arxiv.org/abs/2003.08592☆17Updated 4 years ago
- Code to test Rt estimates against synthetic data☆16Updated 3 years ago
- The IHME Covid-19 Statistical deaths model☆16Updated last year
- 'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)☆64Updated 3 years ago
- An open API for epidemiological data.☆100Updated this week
- Simulation-based Inference for Epidemiological Dynamics☆25Updated 4 months ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆22Updated 4 years ago
- ☆88Updated 4 years ago
- Influenza forecasts visualizer☆40Updated last year
- A tool to estimate time varying instantaneous reproduction number during epidemics☆94Updated 3 weeks ago
- Guidelines and forecasts for a collaborative U.S. influenza forecasting project.☆37Updated 4 years ago
- This package implements both the discrete and continuous maximum likelihood estimators for fitting the power-law distribution to data. Ad…☆109Updated 7 months ago
- Epidemiology analysis package☆142Updated last year
- An Integrative Metaregression Framework for Descriptive Epidemiology☆50Updated last year
- R package for "Epidemics: Models and data using R"☆56Updated 2 years ago
- Scenario analyses for COVID-19 outbreak in the United Kingdom☆64Updated 4 years ago
- ☆23Updated 3 years ago
- R package to implement and visualize several epidemiological forecasting methods.☆21Updated 2 months ago
- R package for deriving social mixing matrices from survey data.☆38Updated last week
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last week
- FluSight Forecast Submissions☆18Updated 4 months ago