HITS-MBM / gromacs-fdaLinks
Force Distribution Analysis (FDA) for GROMACS
☆34Updated last year
Alternatives and similar repositories for gromacs-fda
Users that are interested in gromacs-fda are comparing it to the libraries listed below
Sorting:
- Enable cheminformatics and quantum chemistry☆75Updated last year
- Trusted force field files for gromacs☆53Updated 8 months ago
- A machine learned Molecular Mechanics force field with integration into GROMACS and OpenMM☆48Updated last month
- Sire Molecular Simulations Framework☆59Updated this week
- Best practice document for alchemical free energy calculations going to livecoms journal☆74Updated this week
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- Yasara plugins for Gromacs users☆29Updated last year
- A simple yet versatile toolkit to setup quantum mechanical/molecular mechanical (QM/MM) calculations from molecular dynamics trajectories…☆29Updated last year
- An application for configuring and running simulations with OpenMM☆71Updated last month
- Given an RDKit molecule that does not sanitise, correct it until it does☆41Updated last year
- Physical validation of molecular simulations☆56Updated last week
- STORMM: Structure and TOpology Replica Molecular Mechanics☆73Updated last month
- A comprehensive toolkit for predicting free energies☆53Updated 6 months ago
- Package for consistent reporting of relative free energy results☆39Updated last month
- scripts for analyzing molecular dynamics trajectories using VMD☆39Updated 10 years ago
- Collection of interaction and molecule parameters for the Martini3 force-field☆16Updated 2 years ago
- Sample inputs and tutorial for GROMACS-2022/CP2K QMMM interface☆35Updated 3 years ago
- Challenge details, inputs, and results for the SAMPL7 series of challenges☆47Updated 3 years ago
- Repository for Chemical Perception Sampling Tools☆21Updated 11 months ago
- ☆37Updated 10 months ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆55Updated this week
- LOOS: a lightweight object-oriented structure analysis library☆125Updated 3 months ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- An interoperable Python framework for biomolecular simulation.☆118Updated last week
- ☆65Updated last year
- Modeling molecular ensembles with scalable data structures and parallel computing☆36Updated last week
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆114Updated 6 years ago
- Run OpenMM with forces provided by any Python program☆36Updated 6 months ago