MICLab-Unicamp / medseg
Official repository for reproducing COVID and Lung segmentation prediction (old version of MEDPSeg)
☆10Updated last year
Alternatives and similar repositories for medseg:
Users that are interested in medseg are comparing it to the libraries listed below
- Airway segmentation from chest CTs using deep Convolutional Neural Networks☆66Updated 10 months ago
- NaviAirway: a Bronchiole-sensitive Deep Learning-based Airway Segmentation Pipeline☆50Updated 2 years ago
- ☆14Updated 3 years ago
- Automatic classification of tertiary bronchi based on bronchus masks using a rule-based approach.☆40Updated 2 years ago
- 3D airway segmentation method☆60Updated 3 years ago
- Pytorch implementation of the paper Iterative fully convolutional neural networks for automatic vertebra segmentation accepted in MIDL201…☆63Updated last year
- ☆26Updated last year
- DICOM RT-Struct to mask☆101Updated last year
- This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.☆77Updated 7 months ago
- ☆33Updated last year
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆67Updated 6 months ago
- This project uses a process known as segmentation to extract individual lung components from CT scans such as the airway, bronchioles, ou…☆29Updated 4 years ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 3 years ago
- The code of paper "Transformer-based 3D U-Net for Pulmonary Vessel Segmentation and Artery-vein Separation from CT images"☆28Updated last month
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆82Updated 2 years ago
- [MICCAI'23] Topology Repairing of Disconnected Pulmonary Airways and Vessels: Baselines and a Dataset☆34Updated 11 months ago
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆65Updated 4 years ago
- Landmark detection engine for 3D medical images (MICCAI workshop 2021)☆42Updated 10 months ago
- Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.☆121Updated 3 years ago
- ☆181Updated 4 years ago
- Brain vessel segmentation using 3D convolutional neural networks☆43Updated 2 years ago
- Workflow for Optimal Radiomics Classification☆74Updated 2 months ago
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆83Updated 4 months ago
- The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)☆105Updated 2 months ago
- Structure and position aware graph neural network for airway labeling☆14Updated 3 years ago
- Visualization for radiomics feature generated by pyradiomics☆50Updated 4 months ago
- A Large-Scale Dataset for Spinal Vertebrae Segmentation in Computed Tomography☆168Updated last month
- ☆44Updated 3 years ago
- new and more efficient version for 3D discrete deformable registration, reaching the highest accuracy in several benchmarks☆105Updated last year
- Computed tomography to body composition (Comp2Comp).☆79Updated last week