openworm / open-worm-analysis-toolbox
A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
☆48Updated 5 years ago
Alternatives and similar repositories for open-worm-analysis-toolbox:
Users that are interested in open-worm-analysis-toolbox are comparing it to the libraries listed below
- Multi-Worm Behaviour Tracker☆25Updated 4 years ago
- Model of C elegans body wall muscle based on Boyle & Cohen 2008☆47Updated 11 months ago
- Tools and curated datasets to build quantitative models of C. elegans ion channels☆11Updated 6 years ago
- Conversion script to bring neuron models created in Blender into NeuroML format☆18Updated last year
- NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302☆138Updated 2 years ago
- Unified, simple data access python library for data & facts about C. elegans anatomy☆156Updated 9 months ago
- Computational Neurosciences repository☆29Updated 10 years ago
- neuroConstruct: biophysically detailed neuronal modelling in 3D☆48Updated 2 months ago
- This package provides Python libNeuroML, for working with neuronal models specified in NeuroML☆41Updated 3 months ago
- Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.☆213Updated 3 years ago
- This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.☆56Updated 2 months ago
- Datasets☆26Updated 10 years ago
- The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans☆49Updated 8 years ago
- NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.☆32Updated 5 years ago
- NEURON User Interface☆17Updated 6 years ago
- The Python implementation of the Connection-Set Algebra☆13Updated 2 years ago
- Artificial biological neural network☆31Updated 10 years ago
- Python Library to create, load, edit and save a Geppetto Model☆14Updated last year
- The c302 framework for generating multiscale network models of C. elegans☆120Updated this week
- Geppetto Java frontend bundle☆29Updated last month
- Electrophys Feature Extraction Library☆71Updated 2 months ago
- Docker images for neuroscience☆13Updated 8 months ago
- A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.☆43Updated last week
- Computational Neuroscience class materials in PyDSTool based on Hugh Wilson's book (and some from Eugene Izhikevich's book). DRAFT VERSIO…☆223Updated 11 years ago
- DEPRECATED: Use tvb-root. The science behind The Virtual Brain☆87Updated last year
- Neuronal Morphology Analysis Tool☆105Updated 2 months ago
- OpenCL-based simulator for Nengo neural models☆24Updated this week
- Simulation scripts to compute Local Field Potentials (LFP) of cable compartmental models implemented with NEURON☆9Updated 6 years ago
- Nengo interactive visualizer☆106Updated this week
- MOOSE simulator.☆26Updated 3 years ago