openworm / open-worm-analysis-toolboxLinks
A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
☆48Updated 5 years ago
Alternatives and similar repositories for open-worm-analysis-toolbox
Users that are interested in open-worm-analysis-toolbox are comparing it to the libraries listed below
Sorting:
- Model of C elegans body wall muscle based on Boyle & Cohen 2008☆48Updated 3 months ago
- NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302☆139Updated 2 years ago
- Unified, simple data access python library for data & facts about C. elegans anatomy☆154Updated last year
- Tools and curated datasets to build quantitative models of C. elegans ion channels☆11Updated 6 years ago
- This package provides Python libNeuroML, for working with neuronal models specified in NeuroML☆42Updated last month
- Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.☆216Updated 3 years ago
- The c302 framework for generating multiscale network models of C. elegans☆123Updated last month
- Conversion script to bring neuron models created in Blender into NeuroML format☆18Updated last month
- Computational Neurosciences repository☆30Updated 10 years ago
- Datasets☆26Updated 10 years ago
- This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.☆57Updated 6 months ago
- NEURON User Interface☆18Updated 7 years ago
- Interactive notebooks for trying analyses and exploring datasets☆32Updated 10 years ago
- Python Library to create, load, edit and save a Geppetto Model☆15Updated 2 years ago
- Blue Brain Python Optimisation Library☆215Updated 6 months ago
- MOOSE simulator.☆27Updated 3 years ago
- A workshop for teaching python to neuroscientists with some previous programming experience.☆35Updated 9 years ago
- A generalized pattern recognition system for images developed by the Goldberg group at the NIH/NIA.☆96Updated 2 years ago
- MPI parallel map and cluster scheduling☆59Updated 2 months ago
- A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.☆46Updated last week
- neuroConstruct: biophysically detailed neuronal modelling in 3D☆52Updated 6 months ago
- This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegan…☆380Updated 2 weeks ago
- A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook☆47Updated 2 months ago
- vIPer: a new tool for IPython notebooks.☆60Updated 10 years ago
- Pure Python Evolutionary Algorithms Framework☆46Updated 6 years ago
- C++ basecode and python scripting interface☆19Updated 5 months ago
- A Python implementation of fast non-negative deconvolution☆23Updated 5 years ago
- Computational Neuroscience class materials in PyDSTool based on Hugh Wilson's book (and some from Eugene Izhikevich's book). DRAFT VERSIO…☆223Updated 11 years ago
- NeuroTools is a collection of tools for representing and anlyzing neuroscientific data.☆32Updated 5 years ago
- Digital Organism Simulation Environment (DOSE)☆49Updated 2 years ago