A collection of research papers for AI-based protein design
☆298May 13, 2024Updated last year
Alternatives and similar repositories for awesome-AI-based-protein-design
Users that are interested in awesome-AI-based-protein-design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- List of papers about Proteins Design using Deep Learning☆1,905Mar 21, 2026Updated last week
- A compilation of deep learning methods for protein design☆97Nov 5, 2022Updated 3 years ago
- Awesome Protein Representation Learning☆685Nov 16, 2024Updated last year
- Tutorials, cheat sheets, and other resources for computational methods for protein design.☆133Aug 15, 2023Updated 2 years ago
- ☆214Sep 24, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Design data and process for the AdaptyvBio protein design competition☆10Dec 11, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- Making Protein Design accessible to all via Google Colab!☆895Mar 10, 2026Updated 2 weeks ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆330Oct 28, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- ☆135Jun 3, 2025Updated 9 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Code for the ProteinMPNN paper☆1,677Aug 14, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last month
- A collection of software for protein structure prediction and design☆40Dec 16, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆237Updated this week
- random colab notebooks for biology☆26Aug 23, 2025Updated 7 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated last month
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- Listing of papers about machine learning for proteins.☆1,691May 31, 2024Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A generative model for programmable protein design☆804Apr 11, 2024Updated last year
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆201Sep 18, 2024Updated last year
- ☆211Apr 21, 2025Updated 11 months ago
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 2 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Protein hallucination and inpainting with RoseTTAFold☆280Mar 30, 2023Updated 2 years ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 11 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆580Mar 8, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Directed evolution of proteins in sequence space with gradients☆95Oct 18, 2025Updated 5 months ago
- ☆256Jul 31, 2024Updated last year
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,740Mar 23, 2026Updated last week
- workflow used to prepare PPB-Affinity database☆28Aug 22, 2024Updated last year
- Public RFDiffusionAA repo☆473Jul 9, 2024Updated last year
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆91Feb 12, 2026Updated last month
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆173Feb 6, 2026Updated last month