jhorwath / CNN_for_TEM_Segmentation
Python scripts for data set preparation and CNN training/inference
☆14Updated 5 years ago
Related projects: ⓘ
- PyTorch implementation of several neural network models for cellular image segmentation☆47Updated 5 years ago
- Jupyter notebooks describing data analysis procedures for my published/submitted papers☆11Updated 3 years ago
- Here, we will upload our deep/machine learning models and 'workflows' (such as AtomNet, DefectNet, SymmetryNet, etc) that aid in automate…☆33Updated 3 years ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆49Updated last year
- Open source Python library for building bioimage analysis pipelines☆122Updated this week
- Metrics for determining segmentation accuracy☆36Updated 10 months ago
- ☆12Updated 3 years ago
- Bayesian Particle Instance Segmentation for Electron Microscopy Image Quantification (JCIM 2021).☆20Updated 6 months ago
- Removing Scratches, Stripes, and Curtaining Artifacts in Micrographs☆12Updated 4 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆86Updated last year
- Deep and machine learning for atomic-scale and mesoscale data☆12Updated 7 months ago
- Python implementation of the Mixed-Scale Dense Convolutional Neural Network☆33Updated last year
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆19Updated 4 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- High-throughput droplet microfluidic devices with fluorescence detection systems provide several advantages over conventional end-point c…☆12Updated 5 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆26Updated last year
- Machine Learning for Spectral Imaging☆19Updated 2 years ago
- Python library for reading common AFM file formats☆9Updated 8 months ago
- Deep Learning-Based Point-Scanning Super-Resolution (PSSR)☆81Updated 3 months ago
- Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images☆39Updated last week
- Deep neural network for low-dose electron micrograph denoising☆14Updated 3 years ago
- Package to use an FCN to learn defects from STEM imaging☆20Updated last year
- ☆73Updated 3 weeks ago
- InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification☆40Updated last year
- Analysis of results of the Data Science Bowl 2018☆20Updated 4 years ago
- Deep and Machine Learning for Microscopy☆191Updated 2 months ago
- Visualization of electron microscopy datasets with deep learning☆18Updated 4 years ago
- Machine Learning in Scanning Transmission Electron Microscopy Workshop 2024☆18Updated 3 months ago
- Scalable Instance Segmentation using PyTorch & PyTorch Lightning.☆120Updated 2 months ago
- Deep Learning Analysis of Defect and Phase Evolution During Electron Beam Induced Transformations in WS2☆13Updated 6 years ago