jhorwath / CNN_for_TEM_SegmentationLinks
Python scripts for data set preparation and CNN training/inference
☆14Updated 6 years ago
Alternatives and similar repositories for CNN_for_TEM_Segmentation
Users that are interested in CNN_for_TEM_Segmentation are comparing it to the libraries listed below
Sorting:
- Deep and machine learning for atomic-scale and mesoscale data☆12Updated 6 months ago
- Deep and Machine Learning for Microscopy☆218Updated 6 months ago
- Bayesian Particle Instance Segmentation for Electron Microscopy Image Quantification (JCIM 2021).☆22Updated last year
- Here, we will upload our deep/machine learning models and 'workflows' (such as AtomNet, DefectNet, SymmetryNet, etc) that aid in automate…☆36Updated 4 years ago
- Python implementation of the Mixed-Scale Dense Convolutional Neural Network☆34Updated 2 years ago
- PyTorch implementation of several neural network models for cellular image segmentation☆48Updated 6 years ago
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆223Updated this week
- Workflow for Simulation and Automatic Semantic Segmentation of Electron Microscopy Images☆63Updated 11 months ago
- Jupyter notebooks describing data analysis procedures for my published/submitted papers☆14Updated 4 years ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- Accelerating Single Molecule Localization Microscopy with Deep Learning☆53Updated 2 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆203Updated 5 years ago
- Machine Learning for Spectral Imaging☆21Updated 3 years ago
- Metrics for determining segmentation accuracy☆37Updated 2 years ago
- Open source Python library for building bioimage analysis pipelines☆187Updated last week
- Code repository for the UDCT project☆22Updated 6 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- Python implementation of the Fourier Ring Correlation (FRC) to determine image resolution☆16Updated last year
- Python library for reading common AFM file formats☆12Updated 3 months ago
- ImageDataExtractor 2.0 - a Python library for electron microscopy image quantification.☆20Updated 4 years ago
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- ☆14Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- The ImageJ plugin to run deep-learning models☆97Updated last month
- Package to use an FCN to learn defects from STEM imaging☆27Updated 2 years ago
- Machine Learning in Scanning Transmission Electron Microscopy Workshop 2024☆23Updated last year
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- Gaussian processes and Bayesian optimization for images and hyperspectral data☆57Updated 2 years ago
- Using deep learning approaches and convolutional neural networks (CNN) for spectroscopical data (deep chemometrics)☆75Updated 7 years ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆237Updated 10 months ago