Data annotations in python using jupyter notebooks
☆61Feb 4, 2023Updated 3 years ago
Alternatives and similar repositories for ipyannotations
Users that are interested in ipyannotations are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 2 years ago
- A quick and simple tool for labeling images, videos and time series data, right from Jupyter!☆45Mar 19, 2026Updated last week
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Remote Frame Buffer for Python notebooks☆85Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆21Mar 18, 2026Updated last week
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 8 months ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Sep 20, 2023Updated 2 years ago
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 3 weeks ago
- shrimPy: Smart High-throughput Robust Imaging & Measurement in Python☆13Mar 19, 2026Updated last week
- A Jupyter widget for annotating images with bounding boxes☆142Aug 25, 2024Updated last year
- dask empowered fast4dreg☆15Mar 11, 2026Updated 2 weeks ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Mar 4, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Affinity based segmentation algorithms and tools☆10May 12, 2025Updated 10 months ago
- ☆22May 1, 2025Updated 10 months ago
- single-cell latent diffusion model☆44Mar 16, 2026Updated last week
- ☆22Aug 17, 2023Updated 2 years ago
- Paint segmentations directly to on-disk/remote zarr arrays☆15Jun 26, 2024Updated last year
- Main repository for DIVE☆17Feb 25, 2022Updated 4 years ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Mar 2, 2026Updated 3 weeks ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- An in-cell AI assistant for JupyterLab notebooks☆38Sep 17, 2025Updated 6 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Sep 16, 2021Updated 4 years ago
- Time arrow prediction for live-cell microscopy☆21Jun 17, 2024Updated last year
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated 11 months ago
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- Pipelines and modules for processing optical physiology data☆11Dec 20, 2024Updated last year
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 8 months ago
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- Towards global school mapping using AI & satellite images in support of Giga, a UNICEF-ITU Intitiative☆14Dec 30, 2024Updated last year
- Generate multifunctional and macro recordable GUIs from Python classes☆45Mar 5, 2026Updated 3 weeks ago
- ViReport analysis of COVID-19 using GISAID data☆20Sep 20, 2020Updated 5 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago