hsueh-lab / FFTLinks
Fungal Feature Tracker (FFT): A tool to quantitatively characterize morphology and growth of filamentous fungi
☆13Updated 3 years ago
Alternatives and similar repositories for FFT
Users that are interested in FFT are comparing it to the libraries listed below
Sorting:
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated last month
- babette is an R package to work with BEAST2☆46Updated last month
- population genetic simulations with R and Shiny☆28Updated last year
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆31Updated this week
- ☆11Updated 8 months ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Updated 4 months ago
- ☆11Updated 3 weeks ago
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆61Updated 7 years ago
- Phylogenetic Likelihood Library 2 - experimental☆11Updated 8 months ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 10 years ago
- Functions to manipulate and visualize microbial community data☆13Updated this week
- Software for the Analysis of Phylogenetic Community Structure and Character Evolution, with Phylomatic☆43Updated 3 years ago
- Exploring tree diversity☆14Updated 8 years ago
- R package: Evolutionary biology in R☆19Updated 4 months ago
- ARCHIVED Access sequences from the 1000 Plant Initiative (1KP)☆13Updated 2 months ago
- Ordination lectures for Ecological Methods in Oulu☆22Updated last year
- phylogenetic networks using ggplot2 and ggtree☆13Updated last year
- R package for simulating fossil data on phylogenetic trees under mechanistic models of preservation and sampling☆11Updated 2 months ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 4 years ago
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆16Updated 2 years ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆19Updated 2 years ago
- Dendrograms for Evolutionary Analysis☆12Updated 6 years ago
- A book for teaching people how to do comparative methods in R☆22Updated 2 years ago
- Computes affinity between two entities based on their co-occurrence☆29Updated this week
- Pathogen evolution, selection and immunity☆45Updated last year
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13Updated 2 years ago
- Exploring the Phylogenetic Signal in Continuous Traits☆19Updated 7 months ago
- Using ggtree to Visualize Data on Tree-Like Structure☆25Updated 5 years ago