This plugin enables VMD to display data stored in h5 files that are structured according to the H5MD specifications (http://nongnu.org/h5md/)
☆11Oct 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for VMD-h5mdplugin
Users that are interested in VMD-h5mdplugin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Updated this week
- Flexible Rare Event Sampling Harness System☆11Jul 4, 2016Updated 10 years ago
- Read and write H5MD files☆13May 15, 2025Updated last year
- Submit functions and shell scripts to torque and slurm clusters or local machines using python.☆22Aug 18, 2020Updated 6 years ago
- JS/HTML5 webapp for setting up custom GPU-accelerated OpenMM molecular dynamics simulations.☆12Nov 14, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Datasets for open forcefield parameterization and development☆11Sep 22, 2019Updated 7 years ago
- Cloud-native mirror of NASA FIRMS active fire detections (MODIS + VIIRS, 2000-present), updated hourly☆10Oct 13, 2026Updated 2 weeks ago
- Chemical molecule custom component for Streamlit apps☆17Dec 12, 2024Updated last year
- Massively parallel hybrid particle-field molecular dynamics (hPF-MD) simulation method in Julia☆12Jan 14, 2022Updated 4 years ago
- Algorithms for fast alignment of structures in finite and periodic systems.☆15Aug 11, 2022Updated 4 years ago
- Data visualization software for displaying NetCDF and OPeNDAP earth science data on a 3D sphere☆12Mar 3, 2025Updated last year
- Minimum energy path tools for atomistic simulations☆11Jul 21, 2026Updated 3 months ago
- Python tools for VMD☆10Jun 3, 2018Updated 8 years ago
- HAL's MD package: Highly Accelerated Large-scale Molecular Dynamics simulations☆24Oct 20, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10May 1, 2025Updated last year
- a logistics and persistence engine for the analysis of molecular dynamics trajectories☆30Jan 24, 2020Updated 6 years ago
- Particle Mesh in Python☆27Sep 22, 2025Updated last year
- Scrapes a shutterfly account of all photos in all albums. Nice present for your boomer loved ones whose photos should be in safer hands.☆16Feb 23, 2026Updated 8 months ago
- Winter is coming...☆15Jan 23, 2019Updated 7 years ago
- This software allows users to perform statistical test to determine if a given molecular simulation is consistent with the thermodynamic …☆14Apr 12, 2018Updated 8 years ago
- For discussing and aggregating data for force field development☆15Oct 19, 2016Updated 10 years ago
- Templates for use in preparing articles for the Living Journal of Computational Molecular Sciences (LiveCoMS)☆11Jul 20, 2026Updated 3 months ago
- Finite-temperature variational Monte Carlo calculation of uniform electron gas using neural canonical transformation.☆16Jun 17, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MD trajectory server☆40Jul 6, 2023Updated 3 years ago
- Quantum systems containing matrix elements for second quantized solvers☆11Oct 30, 2024Updated 2 years ago
- MultiResolution Computation Program Package☆16Oct 12, 2026Updated 3 weeks ago
- A poor man's density functional theory program☆14May 18, 2026Updated 5 months ago
- Gibbs sampling for expanded ensembles and replica exchange simulations☆11Jun 1, 2014Updated 12 years ago
- Prototype code of the tight-binding hamiltonian construction neural network model. Check the example_basic_method.py to construct a TB mo…☆33May 5, 2022Updated 4 years ago
- This is the official code for the paper "Is One Layer Enough? Understanding Inference Dynamics in Tabular Foundation Models".☆14May 7, 2026Updated 5 months ago
- Python/C/Go/Rust/Haskell interop examples☆25Feb 8, 2017Updated 9 years ago
- A JavaScript Speed Test library leveraging the CoverageMap Speed Test system and infrastructure☆19Oct 23, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for estimating and analyzing Markov state models☆42Aug 15, 2022Updated 4 years ago
- Script to export the definition for an Amazon Lex bot using the Amazon Lex Model Building Service API.☆13Jul 24, 2017Updated 9 years ago
- ☆13Jun 30, 2025Updated last year
- ggq added☆19Apr 12, 2024Updated 2 years ago
- 🌎 🔧 MCP Server for NASA Earth Data.☆26Oct 10, 2026Updated 3 weeks ago
- Toolkit for open antiviral drug discovery by the Choderalab (formerly ASAP)☆16Oct 5, 2026Updated 3 weeks ago
- Coarse-graining library that implements Force-matching☆11Aug 31, 2020Updated 6 years ago