Alternatives and similar repositories for genomeocean

Users that are interested in genomeocean are comparing it to the libraries listed below

• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆93Updated 6 months ago
• ychuest / Awesome-LLMs-meet-genomes
  Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…
  ☆79Updated 2 weeks ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 5 months ago
• MAGICS-LAB / DNABERT_S
  [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
  ☆111Updated 6 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• mayuefine / c_AMPs-prediction
  ☆84Updated 2 years ago
• lingxusb / megaDNA
  ☆68Updated 10 months ago
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆277Updated 3 weeks ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆152Updated last year
• ntranoslab / esm-variants
  ☆77Updated last year
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆125Updated 9 months ago
• MicroResearchLab / AMP-potency-prediction-EvoGradient
  A PyTorch implementation of "Automatic Identification and Virtual Directed Evolution of Antimicrobial Peptides with Explainable Deep Lear…
  ☆32Updated last month
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 3 months ago
• LucaOne / LucaVirus
  LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model
  ☆42Updated this week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆147Updated 9 months ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• lingxusb / Riboformer
  ☆22Updated 2 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆179Updated last year
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 11 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• hsalis / SalisLabCode
  Models, design algorithms, and other software related to Salis lab publications
  ☆35Updated 9 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆146Updated 2 weeks ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆77Updated 3 months ago
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆199Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆86Updated last week
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆38Updated last month
• LucaOne / LucaOneTasks
  The project of the downstream tasks based on LucaOne's Embedding.
  ☆53Updated this week
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆186Updated last week
• google-research / proteinfer
  Deep networks for protein functional inference
  ☆177Updated 2 months ago