Alternatives and similar repositories for sepsis_01:

Users that are interested in sepsis_01 are comparing it to the libraries listed below

• celehs / PheCAP
  https://celehs.github.io/PheCAP/
  ☆21Updated 3 years ago
• BenGlicksberg / PatientExploreR
  Dynamic visualization of Electronic Health Record data in the OMOP framework
  ☆28Updated 3 years ago
• lanagarmire / cox-nnet
  ☆47Updated 8 years ago
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆87Updated last year
• EHDEN / ETL-UK-Biobank
  ETL UK-Biobank
  ☆13Updated 2 years ago
• RuishanLiu / TrialPathfinder
  ☆61Updated 3 years ago
• elimuinformatics / vcf2fhir
  vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
  ☆38Updated 7 months ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• spiros / ukbiobank-resources
  A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
  ☆49Updated 2 years ago
• Google-Health / genomics-research
  ☆132Updated 3 months ago
• hakyimlab / ukbrest
  ukbREST: efficient and streamlined data access for reproducible research of large biobanks
  ☆38Updated 3 years ago
• OHDSI / Genomic-CDM
  Repository for development of the genomic module of the CDM.
  ☆20Updated 5 years ago
• MIT-LCP / bidmc-datathon
  Materials for the BIDMC datathon (Sat 29 Feb 2020)
  ☆13Updated 10 months ago
• astrazeneca-cgr-publications / mantis-ml-release
  mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
  ☆29Updated last year
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆48Updated 9 months ago
• saphir746 / BiobankRead-Bash
  Python scripts to extract and pre-process UKB data
  ☆31Updated 5 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆17Updated 6 months ago
• luyang-ai4med / POPDx
  Python implementation of POPDx - Predictions for unseen, rare, and common labels.
  ☆9Updated 10 months ago
• dfci / matchminer
  MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials
  ☆42Updated 2 years ago
• phenopolis / phenopolis_genomics_browser
  Python API and React frontend for the Phenopolis Genomics Browser
  ☆31Updated last year
• National-Clinical-Cohort-Collaborative / Phenotype_Data_Acquisition
  The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
  ☆62Updated last year
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆56Updated this week
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆68Updated 3 months ago
• nliulab / AutoScore
  AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator
  ☆32Updated last month
• dihi / development_guide
  Contains standard practices/resources/style guides for data science and development at DIHI
  ☆10Updated last year
• spiros / docker-ukbiobank-utils
  Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch
  ☆12Updated 3 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated last year
• GaoLabXDU / CEPICS
  CEPICS: a comparison and evaluation platform for integration methods in cancer subtyping
  ☆10Updated 4 years ago
• GeneDx / txt2hpo
  Python library for extracting HPO encoded phenotypes from text
  ☆29Updated last year
• EBISPOT / EFO-UKB-mappings
  ☆14Updated 5 years ago