Alternatives and similar repositories for docker-images:

Users that are interested in docker-images are comparing it to the libraries listed below

• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 5 months ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆153Updated last week
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆68Updated this week
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 4 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated this week
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆41Updated 6 months ago
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆57Updated 2 years ago
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆48Updated this week
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆95Updated 8 months ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆50Updated 9 months ago
• ecr05 / MSM_HOCR
  Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries
  ☆38Updated 2 years ago
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆70Updated 9 months ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated 3 weeks ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆96Updated this week
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆139Updated this week
• jmtyszka / bidskit
  Utility functions for working with DICOM and BIDS neuroimaging data
  ☆62Updated 3 months ago
• mjallais / uGUIDE
  ☆22Updated this week
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 5 months ago
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆91Updated this week
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆78Updated this week
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆67Updated last year
• srikash / presurfer
  Scripts to prepare MP2RAGE for Freesurfer
  ☆28Updated last year
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆76Updated 4 years ago
• KUL-Radneuron / KUL_VBG
  A workflow to allow Freesurfer recon-all to run on brain image with gliomas
  ☆29Updated 10 months ago
• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆73Updated 10 months ago
• HumanBrainED / NHP-BrainExtraction
  ☆38Updated 3 years ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆119Updated last year
• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆97Updated this week
• baranaydogan / purifibre
  Purifibre removes spurious streamlines from tractograms
  ☆10Updated 3 years ago
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆64Updated last year