KarelDO / BioDEX
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
☆46Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for BioDEX
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆140Updated 7 months ago
- Medical reasoning using large language models☆85Updated 10 months ago
- Self-verification for LLMs.☆62Updated last year
- For Med-Gemini, we relabeled the MedQA benchmark; this repo includes the annotations and analysis code.☆35Updated 5 months ago
- Biomedical Question Answering Datasets.☆79Updated last year
- Clinical text summarization by adapting large language models☆120Updated 3 months ago
- ☆25Updated 10 months ago
- Official implementation of the ACL 2024: Scientific Inspiration Machines Optimized for Novelty☆68Updated 7 months ago
- ☆82Updated 3 months ago
- [EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records☆65Updated last month
- ☆49Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆89Updated last year
- Sentence tokenizer for clinical/medical text.☆25Updated 5 months ago
- ISMB'24 "Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models"☆41Updated 7 months ago
- MedEmbed is a collection of embedding models fine-tuned specifically for medical and clinical data.☆25Updated last month
- A Python Natural Language Processing Toolkit for Medical Text Generation☆70Updated 3 weeks ago
- OLAPH: Improving Factuality in Biomedical Long-form Question Answering☆38Updated 2 months ago
- LitQA Eval: A difficult set of scientific questions that require context of full-text research papers to answer☆35Updated 4 months ago
- A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)☆96Updated 2 months ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆55Updated 11 months ago
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆17Updated last week
- Official repository of the MIRAGE benchmark☆96Updated 2 weeks ago
- Resources related to EACL 2023 paper "SwitchPrompt: Learning Domain-Specific Gated Soft Prompts for Classification in Low-Resource Domain…☆52Updated last year
- ☆24Updated 4 months ago
- ☆28Updated 4 months ago
- This is Clinfo.AI Demo Instruction☆28Updated 3 months ago
- Code and data for TrialGPT.☆45Updated 3 months ago
- Vector Guideline Comparison for Medical Oncology☆27Updated 5 months ago
- Code for the MedRAG toolkit☆196Updated last month
- This repository includes the official implementation of OpenScholar: Synthesizing Scientific Literature with Retrieval-augmented LMs.☆99Updated this week