KarelDO / BioDEXLinks
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
☆53Updated last year
Alternatives and similar repositories for BioDEX
Users that are interested in BioDEX are comparing it to the libraries listed below
Sorting:
- Medical reasoning using large language models☆91Updated last year
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆211Updated last year
- Self-verification for LLMs.☆66Updated 2 years ago
- ☆94Updated 8 months ago
- ☆50Updated 2 years ago
- Sentence tokenizer for clinical/medical text.☆28Updated last year
- Official implementation of the ACL 2024: Scientific Inspiration Machines Optimized for Novelty☆87Updated last year
- Clinical text summarization by adapting large language models☆149Updated last year
- MedEmbed is a collection of embedding models fine-tuned specifically for medical and clinical data.☆82Updated last year
- Biomedical Question Answering Datasets.☆115Updated 6 months ago
- A large-scale (194k), Multiple-Choice Question Answering (MCQA) dataset designed to address realworld medical entrance exam questions.☆236Updated 2 years ago
- Versatile framework designed to streamline the integration of your models, as well as those sourced from Hugging Face, into complex progr…☆34Updated 2 months ago
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆97Updated 5 months ago
- ☆33Updated last year
- [EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records☆110Updated 10 months ago
- Code and data for "StructLM: Towards Building Generalist Models for Structured Knowledge Grounding" (COLM 2024)☆75Updated last year
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆70Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆83Updated 5 months ago
- OLAPH: Improving Factuality in Biomedical Long-form Question Answering☆37Updated last year
- A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)☆129Updated last year
- Codebase accompanying the Summary of a Haystack paper.☆79Updated last year
- LLMEval☆11Updated last year
- [ISMB 2024] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆64Updated last year
- PyTorch implementation for MRL☆19Updated last year
- ☆34Updated 5 months ago
- [EMNLP 2024] A Retrieval Benchmark for Scientific Literature Search☆99Updated 10 months ago
- [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records☆92Updated 11 months ago
- all scripts used in gatortron project☆124Updated last year
- Dataset and evaluation suite enabling LLM instruction-following for scientific literature understanding.☆44Updated 7 months ago
- This repository contains ScholarQABench data and evaluation pipeline.☆85Updated 2 months ago