KarelDO / BioDEXLinks
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
☆55Updated last year
Alternatives and similar repositories for BioDEX
Users that are interested in BioDEX are comparing it to the libraries listed below
Sorting:
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆220Updated last year
- Medical reasoning using large language models☆92Updated last year
- Self-verification for LLMs.☆67Updated 2 years ago
- ☆94Updated 10 months ago
- Clinical text summarization by adapting large language models☆150Updated last year
- ☆50Updated 2 years ago
- A Python Natural Language Processing Toolkit for Medical Text Generation☆84Updated 6 months ago
- Biomedical Question Answering Datasets.☆121Updated 7 months ago
- Sentence tokenizer for clinical/medical text.☆28Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆99Updated 6 months ago
- Official implementation of the ACL 2024: Scientific Inspiration Machines Optimized for Novelty☆90Updated last year
- ☆36Updated 6 months ago
- MedEmbed is a collection of embedding models fine-tuned specifically for medical and clinical data.☆84Updated 3 weeks ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆72Updated last year
- A large-scale (194k), Multiple-Choice Question Answering (MCQA) dataset designed to address realworld medical entrance exam questions.☆247Updated 3 years ago
- A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)☆131Updated last year
- OLAPH: Improving Factuality in Biomedical Long-form Question Answering☆37Updated last year
- [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records☆96Updated last year
- ☆11Updated last year
- [EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records☆116Updated 11 months ago
- [ISMB 2024] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆64Updated last year
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆28Updated 2 weeks ago
- Versatile framework designed to streamline the integration of your models, as well as those sourced from Hugging Face, into complex progr…☆34Updated 3 months ago
- ☆25Updated last year
- This repository contains ScholarQABench data and evaluation pipeline.☆89Updated 4 months ago
- Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"☆113Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆48Updated last year
- all scripts used in gatortron project☆128Updated 2 years ago
- [EMNLP 2024] A Retrieval Benchmark for Scientific Literature Search☆102Updated last year
- This is Clinfo.AI Demo Instruction☆37Updated last year