Alternatives and similar repositories for BioDEX

Users that are interested in BioDEX are comparing it to the libraries listed below

• microsoft / clinical-self-verification
  Self-verification for LLMs.
  ☆66Updated 2 years ago
• vlievin / medical-reasoning
  Medical reasoning using large language models
  ☆92Updated last year
• ncbi / MedCPT
  Code for MedCPT, a model for zero-shot biomedical information retrieval.
  ☆213Updated last year
• XZhang97666 / AlpaCare
  ☆95Updated 9 months ago
• bowang-lab / clinical-camel
  ☆50Updated 2 years ago
• cactiML / clinitokenizer
  Sentence tokenizer for clinical/medical text.
  ☆28Updated last year
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆84Updated 5 months ago
• StanfordMIMI / clin-summ
  Clinical text summarization by adapting large language models
  ☆149Updated last year
• som-shahlab / medalign
  MedAlign is a clinician-generated dataset for instruction following with electronic medical records.
  ☆97Updated 6 months ago
• abhinand5 / MedEmbed
  MedEmbed is a collection of embedding models fine-tuned specifically for medical and clinical data.
  ☆83Updated last week
• Andy-jqa / biomedical-qa-datasets
  Biomedical Question Answering Datasets.
  ☆119Updated 6 months ago
• Knowledgator / utca
  Versatile framework designed to streamline the integration of your models, as well as those sourced from Hugging Face, into complex progr…
  ☆34Updated 3 months ago
• pmc-patients / pmc-patients
  PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…
  ☆70Updated last year
• TIGER-AI-Lab / StructLM
  Code and data for "StructLM: Towards Building Generalist Models for Structured Knowledge Grounding" (COLM 2024)
  ☆75Updated last year
• uf-hobi-informatics-lab / GatorTron
  all scripts used in gatortron project
  ☆126Updated 2 years ago
• glee4810 / EHRSQL
  [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records
  ☆93Updated 11 months ago
• medmcqa / medmcqa
  A large-scale (194k), Multiple-Choice Question Answering (MCQA) dataset designed to address realworld medical entrance exam questions.
  ☆238Updated 2 years ago
• openlifescience-ai / Open-Medical-Reasoning-Tasks
  A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)
  ☆130Updated last year
• starmpcc / Asclepius
  Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
  ☆113Updated last year
• wshi83 / EhrAgent
  [EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records
  ☆114Updated 10 months ago
• dmis-lab / OLAPH
  OLAPH: Improving Factuality in Biomedical Long-form Question Answering
  ☆37Updated last year
• chufangao / CTOD
  Code for CTO: A Large Clinical Trial Outcome and QA Dataset
  ☆28Updated 2 weeks ago
• shan23chen / MedBrowseComp
  ☆35Updated 6 months ago
• krypticmouse / matryoshka-representation-learning
  PyTorch implementation for MRL
  ☆20Updated last year
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated last year
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆25Updated 3 months ago
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• shauryr / S2QA
  Get answers to research questions from 200M+ papers. Link to demo -
  ☆206Updated 2 weeks ago
• princeton-nlp / LitSearch
  [EMNLP 2024] A Retrieval Benchmark for Scientific Literature Search
  ☆101Updated 11 months ago
• EagleW / Scientific-Inspiration-Machines-Optimized-for-Novelty
  Official implementation of the ACL 2024: Scientific Inspiration Machines Optimized for Novelty
  ☆87Updated last year