KarelDO / BioDEXLinks
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
☆51Updated last year
Alternatives and similar repositories for BioDEX
Users that are interested in BioDEX are comparing it to the libraries listed below
Sorting:
- Self-verification for LLMs.☆64Updated last year
- MedAlign is a clinician-generated dataset for instruction following with electronic medical records.☆94Updated last month
- Sentence tokenizer for clinical/medical text.☆27Updated last year
- ☆50Updated 2 years ago
- Code for MedCPT, a model for zero-shot biomedical information retrieval.☆185Updated last year
- Medical reasoning using large language models☆89Updated last year
- A Python Natural Language Processing Toolkit for Medical Text Generation☆81Updated last month
- [EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records☆100Updated 5 months ago
- ☆91Updated 4 months ago
- For Med-Gemini, we relabeled the MedQA benchmark; this repo includes the annotations and analysis code.☆49Updated last year
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆36Updated 6 months ago
- Code for CTO: A Large Clinical Trial Outcome and QA Dataset☆24Updated 2 months ago
- ☆32Updated 11 months ago
- Biomedical Question Answering Datasets.☆111Updated last month
- MedEmbed is a collection of embedding models fine-tuned specifically for medical and clinical data.☆64Updated 8 months ago
- Biomedical Entity Linking Benchmark☆13Updated 6 months ago
- Clinical text summarization by adapting large language models☆143Updated 10 months ago
- PMC-Patients: A Large-scale Dataset of Patient Summaries and Relations for Benchmarking Retrieval-based Clinical Decision Support Systems…☆67Updated last year
- This is Clinfo.AI Demo Instruction☆34Updated 10 months ago
- ☆25Updated last year
- A comprehensive repository of reasoning tasks for Medical LLMs (and beyond)☆121Updated 9 months ago
- ☆29Updated 4 months ago
- PyTorch implementation for MRL☆18Updated last year
- Expert-Curated Oncology Reports to Advance Language Model Inference☆29Updated last year
- Official implementation of the ACL 2024: Scientific Inspiration Machines Optimized for Novelty☆80Updated last year
- [ISMB '24] Self-BioRAG: Improving Medical Reasoning through Retrieval and Self-Reflection with Retrieval-Augmented Large Language Models☆63Updated last year
- SciFive: a text-text transformer model for biomedical literature☆95Updated last year
- python library for graphical and continuous representations of ICD9 and ICD10 codes☆40Updated 5 months ago
- [NeurIPS'22] EHRSQL: A Practical Text-to-SQL Benchmark for Electronic Health Records☆84Updated 7 months ago
- OLAPH: Improving Factuality in Biomedical Long-form Question Answering☆40Updated 9 months ago